PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s880731g006
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family WRKY
Protein Properties Length: 401aa    MW: 43845.1 Da    PI: 9.2471
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s880731g006genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.26.2e-32121177360
                        -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
               WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                        DgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers  d+k+ ei+Y++eHnh+k
  PDK_30s880731g006 121 DGYNWRKYGQKQVKGSEYPRSYYKCTHPSCPVKKKVERSL-DGKIAEIVYRSEHNHPK 177
                        9***************************************.***************85 PP
2WRKY955.2e-30321377359
                        -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        Dg++WrKYGqK+vkg+++prsYYrCts++C+v+k ve+++++   +++tYeg+Hnhe
  PDK_30s880731g006 321 DGFHWRKYGQKVVKGNPYPRSYYRCTSPKCNVRKYVEKASDESGSFVTTYEGKHNHE 377
                        9*******************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.5E-28107178IPR003657WRKY domain
SuperFamilySSF1182905.62E-25118178IPR003657WRKY domain
SMARTSM007741.0E-35119177IPR003657WRKY domain
PfamPF031061.2E-24121176IPR003657WRKY domain
PROSITE profilePS5081123.961121178IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.5E-31305379IPR003657WRKY domain
SuperFamilySSF1182904.45E-27313379IPR003657WRKY domain
PROSITE profilePS5081131.525314379IPR003657WRKY domain
SMARTSM007744.5E-34319378IPR003657WRKY domain
PfamPF031061.1E-23321377IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010214Biological Processseed coat development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MRDEEKIVVA KPVASRPYPN LGSFSELLAG AMNASPATSF AEATAAIRPK TLRFKPSPNL  60
ASSSQANRQF QYQPALDCHQ DSPSHMEMDR IHEPSNSAPP NTEQDTRTQQ PTTSGDRRSY  120
DGYNWRKYGQ KQVKGSEYPR SYYKCTHPSC PVKKKVERSL DGKIAEIVYR SEHNHPKPQP  180
PKRLSSGSQG QAVASEGPGR ESGNPLWNSH LVEGNVSDGR VENDNEISFP VASSFIGQAQ  240
FSHDPLLAAS YNSATKNPDA AGGLSGASEV GSGTASLDND KLNYKRRKNE DQVSGAGAAT  300
EGAAEPRSKT QTSIESDVSG DGFHWRKYGQ KVVKGNPYPR SYYRCTSPKC NVRKYVEKAS  360
DESGSFVTTY EGKHNHEMPA RKTNLGVSYP DAGGLNNSRH N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-29121380678Probable WRKY transcription factor 4
2lex_A4e-29121380678Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008783654.10.0WRKY transcription factor 44-like isoform X1
TrEMBLA0A2H3XH140.0A0A2H3XH14_PHODC; WRKY transcription factor 44-like isoform X1
STRINGXP_008783653.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1847669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37260.14e-85WRKY family protein