PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s881031g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

SBP

Protein Properties

Length: 205aa MW: 22202.4 Da PI: 10.0735

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s881031g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	50.5	5.4e-16	3	33	47	77
SSEEETTT--SS--S-STTTT-------S-- CS SBP 47 srfhelsefDeekrsCrrrLakhnerrrkkq 77 +rfh l+efDe+krsCr+rLa+hn+rrrk+q PDK_30s881031g001 3 ARFHVLTEFDEAKRSCRKRLADHNRRRRKPQ 33 7****************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51141	14.811	1	32	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:4.10.1100.10	4.7E-5	3	19	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	2.0E-8	3	31	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.73E-12	3	35	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence Send to blast
MAARFHVLTE FDEAKRSCRK RLADHNRRRR KPQLPAANAD SPAPENPPTN SMEKSKQTAK 60 APRDDSTVKS AATISNASTS LEGQQGYSNK ATRLRNGPAL SLGGVGAVEK RGMGSSSAMC 120 QSQGHFVAMT EDKVSQQQHQ QQQRFFSSPS ATGGTFFHHH NLFCSSSNEA SQSTGGGSGD 180 ASSHHHHHQS NLLHLGQAMF EVDFM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	14	31	KRSCRKRLADHNRRRRKP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008781929.1	1e-145	squamosa promoter-binding-like protein 10
TrEMBL	A0A2H3XD40	1e-143	A0A2H3XD40_PHODC; squamosa promoter-binding-like protein 10
STRING	XP_008781929.1	1e-144	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6990	34	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	8e-12	SBP family protein