PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s881141g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

GRAS

Protein Properties

Length: 377aa MW: 40947 Da PI: 8.0107

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s881141g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	51.9	1.4e-16	1	79	6	92
GRAS 6 lecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 ++cAeav++++l++a+al++++s la+++g +m+++a yf+eALa+r++r ++p+++ +s+ + + f+e +P+lk PDK_30s881141g001 1 MACAEAVQQENLKAADALVKQISVLATSQGGAMRKVAGYFAEALARRIYR--------VHPQQDCALDSAFSDILQMHFYESCPYLK 79 68**********************************************........66666665555555555566*****97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	9.001	1	79	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.9E-14	1	79	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence Send to blast
MACAEAVQQE NLKAADALVK QISVLATSQG GAMRKVAGYF AEALARRIYR VHPQQDCALD 60 SAFSDILQMH FYESCPYLKD LGKVSACPCL DVGIGACIAS GVTRKLLGYD ASMDKILRDN 120 TSQDSISSGL FISEEYGAGM CHRAWPWRIL GEIGSAFGGG PRSALPAWQD TEIGPTWGLR 180 YIFGEVGSVG VEVSLAFLTL RTIHFAPHQV AFETTKPRSL EAFLGRKMFT CVPINMSVVI 240 AITVHAPKMS SEKLVASDLL PAHSKGPQNP GQTRNAEIFQ PRDLYCLPSS RASTGAEAVE 300 LAIENAAQQN WTSISYTKEE AISRAIDFVN KLKTFSVIDG KQSGCLQTLE IRALLRCCRT 360 SSNVPVRVNP PSSNIKH

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence Send to blast

MACAEAVQQE NLKAADALVK QISVLATSQG GAMRKVAGYF AEALARRIYR VHPQQDCALD  60
SAFSDILQMH FYESCPYLKD LGKVSACPCL DVGIGACIAS GVTRKLLGYD ASMDKILRDN  120
TSQDSISSGL FISEEYGAGM CHRAWPWRIL GEIGSAFGGG PRSALPAWQD TEIGPTWGLR  180
YIFGEVGSVG VEVSLAFLTL RTIHFAPHQV AFETTKPRSL EAFLGRKMFT CVPINMSVVI  240
AITVHAPKMS SEKLVASDLL PAHSKGPQNP GQTRNAEIFQ PRDLYCLPSS RASTGAEAVE  300
LAIENAAQQN WTSISYTKEE AISRAIDFVN KLKTFSVIDG KQSGCLQTLE IRALLRCCRT  360
SSNVPVRVNP PSSNIKH

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP998	38	138

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66350.1	4e-33	RGA-like 1