PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s883021g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family ERF
Protein Properties Length: 327aa    MW: 35769.2 Da    PI: 5.1952
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s883021g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.11.5e-20127176255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                        +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+a+++a+++++g
  PDK_30s883021g002 127 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDEAALRFRG 176
                        7********.**********7.....337************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103225.752127184IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-23127185IPR016177DNA-binding domain
PfamPF008472.6E-14127176IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.8E-33127185IPR001471AP2/ERF domain
SMARTSM003805.7E-37127190IPR001471AP2/ERF domain
PRINTSPR003677.5E-12128139IPR001471AP2/ERF domain
CDDcd000182.28E-16135186No hitNo description
PRINTSPR003677.5E-12150166IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MAQDVTLSSD HRSREMSTMV SALSHVISPE VVPAGHMGGS VSSPPSSSLS SQSWGGQRDR  60
ELPPELLMRY YHGYDQFGSY DGEALPNVAA TEHSPQSLLT TIQAPAMEES SPSGYREAER  120
EAAPRRRYRG VRQRPWGKWA AEIRDPHKAA RVWLGTFDTA EAAARAYDEA ALRFRGSRAK  180
LNFPEDVRLY STPPPAPLPI SNSPATLSSD ASRDYLEYSR LLQGVGDYQR LPPTSLLDQF  240
MYSNYSSAMD STLADGSLAT HSFPTSSASS SSVFASSSSS SSISSPSYPL SYPLEETASE  300
TWVREDGSVF QRPYWTDSNQ FPPPSSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-23123187166ATERF1
3gcc_A2e-23123187166ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008785849.10.0ethylene-responsive transcription factor ERF110-like
TrEMBLA0A2H3XMI60.0A0A2H3XMI6_PHODC; ethylene-responsive transcription factor ERF110-like
STRINGXP_008785849.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2495935
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.15e-18ethylene response factor 110