PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s887211g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

bZIP

Protein Properties

Length: 420aa MW: 45390.4 Da PI: 6.5163

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s887211g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.2	1.1e-10	233	291	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR +A rs +RK +i+eLe+kv++L++e ++L +l +l+ + l++e+ PDK_30s887211g001 233 KRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATTLSAQLTMLQRDTSGLTAEN 291 9***********************************************99988888776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.0E-16	229	293	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.921	231	294	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	6.54E-11	233	284	No hit	No description
Pfam	PF00170	5.2E-9	233	290	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	9.9E-11	233	287	No hit	No description
CDD	cd14703	9.62E-24	234	283	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 420 aa Download sequence Send to blast
MEKDKSPVHG GGGGCAAAGG GSGLPPPLPR YAALASPSSS FPLKGEPSSS SSIPGSTPES 60 GHFGQRVVPD TGQFSHDISG MPEHPPRNVG HRRAQSEILS LPDDISFDSD LGVVGSGEGP 120 SLSDETEEDL LSMYLDMDKF TSSSAASELD LLGSENSVTA AAPAPTFPLQ TENLASASNE 180 RPRVRHQHSQ SMDGSTSIKP EILASGSERP SLAETKKAMS AAKLADISLV DPKRAKRIWA 240 NRQSAARSKE RKMRYIAELE RKVQTLQTEA TTLSAQLTML QRDTSGLTAE NNELKLRLQT 300 MEQQVHLQDA LNDALREEVQ RLKIATGPAN PNGGQVMNLG PSFGATQQYY HRSHAMQSLM 360 AARQLQQLQI HSQHQQQMHP QQHQPQVQQQ QQQQSPADLK MKGVMTSQRE GTSDNSTPQE

Sequence ? help Back to Top

Protein Sequence Length: 420 aa Download sequence Send to blast

MEKDKSPVHG GGGGCAAAGG GSGLPPPLPR YAALASPSSS FPLKGEPSSS SSIPGSTPES  60
GHFGQRVVPD TGQFSHDISG MPEHPPRNVG HRRAQSEILS LPDDISFDSD LGVVGSGEGP  120
SLSDETEEDL LSMYLDMDKF TSSSAASELD LLGSENSVTA AAPAPTFPLQ TENLASASNE  180
RPRVRHQHSQ SMDGSTSIKP EILASGSERP SLAETKKAMS AAKLADISLV DPKRAKRIWA  240
NRQSAARSKE RKMRYIAELE RKVQTLQTEA TTLSAQLTML QRDTSGLTAE NNELKLRLQT  300
MEQQVHLQDA LNDALREEVQ RLKIATGPAN PNGGQVMNLG PSFGATQQYY HRSHAMQSLM  360
AARQLQQLQI HSQHQQQMHP QQHQPQVQQQ QQQQSPADLK MKGVMTSQRE GTSDNSTPQE

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor with an activatory role.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00126	DAP	Transfer from AT1G06070	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL606627	3e-31	AL606627.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0067K08, complete sequence.
GenBank	AP014960	3e-31	AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBank	CR855196	3e-31	CR855196.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0159F11, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008791799.1	0.0	transcription factor RF2a-like isoform X1
Swissprot	Q04088	1e-127	POF21_ARATH; Probable transcription factor PosF21
TrEMBL	A0A2H3Y170	0.0	A0A2H3Y170_PHODC; transcription factor RF2a-like isoform X1
STRING	XP_008791799.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4269	38	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06070.1	1e-135	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751]