PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s888801g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family WRKY
Protein Properties Length: 695aa    MW: 75983.5 Da    PI: 7.2282
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s888801g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.83.9e-32331387259
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        +DgynWrKYGqK+vkgsefprsY++Ct+++Cpvkkkvers+ +++++ei+Y+g Hnh+
  PDK_30s888801g002 331 EDGYNWRKYGQKHVKGSEFPRSYHKCTHPNCPVKKKVERSR-EGRITEIIYKGAHNHP 387
                        8****************************************.***************8 PP
2WRKY103.71e-32520578159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        ldDgy+WrKYGqK+vkg+++prsYY+Ct +gC+v+k+ver+++d k v++tYeg+Hnhe
  PDK_30s888801g002 520 LDDGYRWRKYGQKVVKGNPNPRSYYKCTNPGCTVRKHVERASHDLKSVITTYEGKHNHE 578
                        59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.7E-28321388IPR003657WRKY domain
PROSITE profilePS5081121.689325389IPR003657WRKY domain
SuperFamilySSF1182901.57E-24329388IPR003657WRKY domain
SMARTSM007742.7E-35330388IPR003657WRKY domain
PfamPF031064.5E-24331387IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.1E-37505580IPR003657WRKY domain
SuperFamilySSF1182901.7E-28512580IPR003657WRKY domain
PROSITE profilePS5081137.826515580IPR003657WRKY domain
SMARTSM007747.9E-38520579IPR003657WRKY domain
PfamPF031067.4E-25521578IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 695 aa     Download sequence    Send to blast
MAGMEENDVT IGETMPFLSD FKSVEFGAGS FSDSMRDGNQ AKFPASRKQD ATMNFKHSDS  60
SSEPSSLDVQ KSSMRGGLAE RIAARAGFNS LRLNTAEIRQ VNFSSSTTDV CSLYITIPPG  120
LSPAALLNSP VFLSTSLLRP IIFNVAPPKF CYRLLQAEPS PTTGKFPFTQ CTNNSSVSLW  180
GTPDKRETHT VEDMDPQLFA FKPQLGSNSC YTSCAENKAE PTTNHQHSLP SFKELAQSDC  240
PAQTRGVEAS LQCQPRQDLN LEDGSYNSFS RKDGLYDSTN QRDTTEKAML HQIATYPIMV  300
SEHSPTPDDP QGGETDTKGE VSSLAVGAPA EDGYNWRKYG QKHVKGSEFP RSYHKCTHPN  360
CPVKKKVERS REGRITEIIY KGAHNHPRLS RSFSSMQLEG SEQPFKAGAR DGRNDGPEAA  420
PSPSLAAAFC DASNSMAVIE GSASCEIKDA MDVSSNLSNN QDETDRANHG RMSRGCDGEG  480
DDTEPKRRKL DAGELEMSAS SKAVREPRVV VQTTSEVDIL DDGYRWRKYG QKVVKGNPNP  540
RSYYKCTNPG CTVRKHVERA SHDLKSVITT YEGKHNHEVP AARNNFQASC GSFNAPPTSA  600
PQPQSLHRRP ELAAQMQERL ARLDWPPPAG RACISGRDQL APTTSFSFGI NKGMAMNLAM  660
AGFGPLASSM QMPVPPSGYS YLRVDHRKAS EGEGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-37331581878Probable WRKY transcription factor 4
2lex_A6e-37331581878Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ9569282e-67FJ956928.1 Allagoptera arenaria voucher NA:Meerow 3200 WRKY transcription factor 2 (WRKY2) gene, exons 1, 2 and partial cds.
GenBankFJ9569292e-67FJ956929.1 Allagoptera leucocalyx voucher FTG:Zardini 54930 WRKY transcription factor 2 (WRKY2) gene, exons 1, 2 and partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026661880.10.0probable WRKY transcription factor 2
TrEMBLA0A3Q0I8G50.0A0A3Q0I8G5_PHODC; probable WRKY transcription factor 2
STRINGXP_008794757.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP207538100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.11e-117WRKY DNA-binding protein 2