PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s890901g014
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family TALE
Protein Properties Length: 542aa    MW: 59752.9 Da    PI: 7.7038
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s890901g014genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox31.33.4e-103373741954
                        HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
           Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                        Fe   ++yp+ ++++ L+k++gLt +qV++WF N R +
  PDK_30s890901g014 337 FEHflHPYPTDTDKQMLSKQTGLTRNQVSNWFINARVR 374
                        554459******************************88 PP
2BELL902.4e-29204273372
               BELL   3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                        +e q kk++L+s+l+eV++rYkqy++q+q+v  sFe vagl + +pY+s+Al+a+S hFr L+ +i++q+
  PDK_30s890901g014 204 REQQWKKSRLISMLDEVYRRYKQYYQQVQAVTTSFESVAGLSTTAPYASMALNAMSSHFRRLRVMISNQL 273
                        7899***************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.3E-31136271IPR006563POX domain
PfamPF075261.1E-34141270IPR006563POX domain
SMARTSM003895.7E-11318382IPR001356Homeobox domain
CDDcd000861.14E-13318379No hitNo description
PROSITE profilePS5007111.807319378IPR001356Homeobox domain
SuperFamilySSF466893.42E-17319386IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.4E-28321382IPR009057Homeodomain-like
PfamPF059201.3E-18335374IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010089Biological Processxylem development
GO:0010154Biological Processfruit development
GO:0010223Biological Processsecondary shoot formation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048457Biological Processfloral whorl morphogenesis
GO:0048645Biological Processorgan formation
GO:0080006Biological Processinternode patterning
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MSSAAERFAV VGRGKAQLQQ QHPMYHVPQH SRREKLRFPS EDSPPPISLP SLHDPSTAWP  60
LYPADTVTSF LLASSSSSSS SSSTCYSQNP NYSIASTHHH RQISNQGFSL SLSSSASSPP  120
PPARHQFGVG PLGPFTGYAT VLNRSSFLEP ARQLLEEICD FGRRAVTAAG GSGAGDMLLD  180
ADPREPSPMD HRMQVNEDGR ISAREQQWKK SRLISMLDEV YRRYKQYYQQ VQAVTTSFES  240
VAGLSTTAPY ASMALNAMSS HFRRLRVMIS NQLHHTNKII GKEGLSREGA PSFGLINNGA  300
CLQRTVNNSG TFGQLHIWRP QRGLPEYAVS VLRAWLFEHF LHPYPTDTDK QMLSKQTGLT  360
RNQVSNWFIN ARVRLWKPMV EEIHSLEMQQ LHKVSAGDKS HVTNEQSQLP SPSTAASCNS  420
RPAQSANSPK NEHPTTKCIQ DDLTQIPNHT QEPCNFVYDV VPGHQHIGFG LDVAAGGTSG  480
VSLTLGLHQA SGVCLAEPLP LNVINCFGLE ECNDVYVMGA FDGQEWQFGK NLGGQFFHDF  540
VG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-16324382563Homeobox protein Meis2
3k2a_B2e-16324382563Homeobox protein Meis2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008811362.10.0BEL1-like homeodomain protein 9
RefseqXP_008811363.10.0BEL1-like homeodomain protein 9
RefseqXP_026666368.10.0BEL1-like homeodomain protein 9
TrEMBLA0A2H3ZCC40.0A0A2H3ZCC4_PHODC; BEL1-like homeodomain protein 9
STRINGXP_008811362.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25283881
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02030.11e-64TALE family protein