PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s891671g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

bHLH

Protein Properties

Length: 496aa MW: 54295.2 Da PI: 10.1544

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s891671g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	24.7	4.3e-08	12	65	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55 + +++E++RR +++ ++L +l+P ++sk l+ + L +A YIksL+ PDK_30s891671g001 12 MERKMVEKNRRMHMKGLCFKLSSLIPREHITSSKDaLTQQDYLDLAASYIKSLR 65 56789********************544555557**************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.80E-5	7	69	No hit	No description
PROSITE profile	PS50888	10.213	9	64	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.88E-9	11	76	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.5E-10	11	76	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.7E-5	13	64	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF06075	1.2E-63	192	473	IPR010341	Protein of unknown function DUF936, plant

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 496 aa Download sequence Send to blast
MKSSGGRSAA KMERKMVEKN RRMHMKGLCF KLSSLIPREH ITSSKDALTQ QDYLDLAASY 60 IKSLRERIEN LKQRRELRTS TDVGINKGIS NGMAKGMSLP VIEVRHQESN LEVVLISGLN 120 RSFTFHEVIS ILEEEGAEVV NASFSIVGDK IFHTIHSQIK CTFPSPCSTN PFSRQLAPEL 180 ALKLQGGSMA TLAPGVLLKL LDGMNTGASK PVGEHRNALL QVTDIVPADL DEKDLWPKHG 240 FYIKVSDSSH SIYVSLPFDQ DDLVLSNKMQ LGQFIHVDRL EPSSPIPVIM GAKPLPGRHP 300 LMGTPEPIVR AKGNGGKSAN HHRRGSWGPE QNPAGGVSSP KVVKPTTLDF EEKTPVKDRA 360 WRRTGKEGIS WVTPRSSVIG TPLSKMSDLK EASTSVRKSC VISKFSKSNS LCERDPKIPK 420 SPFPTEKNAT TFAARLRSAA KVEDFSSTSD EQEDNSVISN RLYSHSGSSA TSKQSSGNCM 480 PLPGKLSMLG KVLSVF

Sequence ? help Back to Top

Protein Sequence Length: 496 aa Download sequence Send to blast

MKSSGGRSAA KMERKMVEKN RRMHMKGLCF KLSSLIPREH ITSSKDALTQ QDYLDLAASY  60
IKSLRERIEN LKQRRELRTS TDVGINKGIS NGMAKGMSLP VIEVRHQESN LEVVLISGLN  120
RSFTFHEVIS ILEEEGAEVV NASFSIVGDK IFHTIHSQIK CTFPSPCSTN PFSRQLAPEL  180
ALKLQGGSMA TLAPGVLLKL LDGMNTGASK PVGEHRNALL QVTDIVPADL DEKDLWPKHG  240
FYIKVSDSSH SIYVSLPFDQ DDLVLSNKMQ LGQFIHVDRL EPSSPIPVIM GAKPLPGRHP  300
LMGTPEPIVR AKGNGGKSAN HHRRGSWGPE QNPAGGVSSP KVVKPTTLDF EEKTPVKDRA  360
WRRTGKEGIS WVTPRSSVIG TPLSKMSDLK EASTSVRKSC VISKFSKSNS LCERDPKIPK  420
SPFPTEKNAT TFAARLRSAA KVEDFSSTSD EQEDNSVISN RLYSHSGSSA TSKQSSGNCM  480
PLPGKLSMLG KVLSVF

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008782438.1	0.0	uncharacterized protein LOC103701975
TrEMBL	A0A2H3XE42	0.0	A0A2H3XE42_PHODC; uncharacterized protein LOC103701975
STRING	XP_008782438.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8253	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20970.1	4e-24	bHLH family protein