PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s901171g003
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB
Protein Properties Length: 181aa    MW: 20775.8 Da    PI: 10.0033
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s901171g003genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding574.4e-181461148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g+WT+eEd +l+ +++++G+g+Wk+++   g+ R+ k+c++rw +yl
  PDK_30s901171g003 14 KGPWTPEEDIILISYIQEHGPGNWKSVPTNTGLMRCSKSCRLRWTNYL 61
                       79********************************************97 PP
2Myb_DNA-binding29.41.8e-0971972048
                       TTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding 20 GggtWktIartmgkgRtlkqcksrwqkyl 48
                         + W++Ia++++ +Rt++++k++w+++l
  PDK_30s901171g003 71 KER-WAAIASYLP-RRTDNDIKNYWNTHL 97
                       556.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-23568IPR009057Homeodomain-like
PROSITE profilePS5129426.002965IPR017930Myb domain
SMARTSM007177.9E-141363IPR001005SANT/Myb domain
SuperFamilySSF466891.57E-241498IPR009057Homeodomain-like
PfamPF002497.3E-171461IPR001005SANT/Myb domain
CDDcd001671.69E-111661No hitNo description
PROSITE profilePS500906.5866497IPR017877Myb-like domain
SMARTSM007174.16799IPR001005SANT/Myb domain
PfamPF002496.7E-87097IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-1372107IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MGRPPCCDKV DIKKGPWTPE EDIILISYIQ EHGPGNWKSV PTNTGLMRCS KSCRLRWTNY  60
LRPGIKQALL KERWAAIASY LPRRTDNDIK NYWNTHLKKK IKKDQTTIGS YMAPSDSTIT  120
CHELIAKGYN SETRNSDIST IHFPLPRSSH SSSTYASSAE NISRLLEGWM RSCPKRERTL  180
F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-181110124128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of gene (e.g. drought-regulated and flavonoid biosynthetic genes) expression and stomatal movements leading to negative regulation of responses to drought and responses to other physiological stimuli (e.g. light). {ECO:0000269|PubMed:22018045}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by abscisic acid (ABA) and osmotic stress (salt stress). {ECO:0000269|PubMed:22018045}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008792495.11e-113myb-related protein 306
SwissprotB3VTV71e-82MYB60_VITVI; Transcription factor MYB60
TrEMBLA0A2H3Y2N11e-112A0A2H3Y2N1_PHODC; myb-related protein 306
STRINGXP_008792495.11e-113(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22938296
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08810.19e-67myb domain protein 60
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]