PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s903491g005
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family LBD
Protein Properties Length: 254aa    MW: 27171.7 Da    PI: 8.4846
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s903491g005genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.51.2e-39796191
             DUF260  1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91
                       +CaaCk+lrrkC+++Cv+ap  p +qp+kfanvh++FGasnv kll++l++ +reda++sl+yeAear+rdPvyG+vg i+ lq++l+ql+
  PDK_30s903491g005  7 PCAACKFLRRKCTQGCVFAPF-PPDQPQKFANVHRIFGASNVAKLLNELSPAQREDAVNSLAYEAEARLRDPVYGCVGYISLLQHKLKQLQ 96
                       7*******************7.******************************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.5376106IPR004883Lateral organ boundaries, LOB
PfamPF031952.6E-40797IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MSSSNSPCAA CKFLRRKCTQ GCVFAPFPPD QPQKFANVHR IFGASNVAKL LNELSPAQRE  60
DAVNSLAYEA EARLRDPVYG CVGYISLLQH KLKQLQGASP SSAPPFGVPG MGIGMGLALA  120
AGAGTGASPH HPQILMREQQ QQMAEAQQLA VAVAAVREQE MLRSYEQQQE LARFGTGYTD  180
GRAFNQIGVS ATVAVAPGTP PGLALVSPQP IETPFLVQHL QQYPEQPRQQ QRQARPQHQR  240
AGSDEGSSGM GPSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-464968101LOB family transfactor Ramosa2.1
5ly0_B2e-464968101LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019701995.15e-96LOB domain-containing protein 36
TrEMBLA0A427A3W71e-90A0A427A3W7_ENSVE; Uncharacterized protein
STRINGXP_008792688.11e-95(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61433456
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66870.14e-53ASYMMETRIC LEAVES 2-like 1