PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s904851g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family WRKY
Protein Properties Length: 239aa    MW: 26587.6 Da    PI: 9.5597
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s904851g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.22.6e-313593259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
                       +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+
  PDK_30s904851g001 35 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 93
                       699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-312995IPR003657WRKY domain
PROSITE profilePS5081133.1092995IPR003657WRKY domain
SuperFamilySSF1182901.02E-263295IPR003657WRKY domain
SMARTSM007741.4E-373494IPR003657WRKY domain
PfamPF031063.5E-263693IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MARRIERRKS QAKKVVCIPA PAAAGSRSSG EVVPSDLWAW RKYGQKPIKG SPYPRGYYRC  60
SSSKGCSARK QVERSRTDPN MLVITYTSEH NHPWPTQRNA LAGSTRSQSS KNSSSALKNS  120
PRKQKPATSH EEESMAMTSS SAPAVKGEAR EMGKAIDSVE NNEFDQAFQQ SYKAMIPDSN  180
QPNDFFADLA ELEPDPMSLI FSKGSMETKP DEERGERALD PFNLFDWAGN SFEESRKGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-271096380Disease resistance protein RRS1
5w3x_D2e-271096380Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008779946.11e-171probable WRKY transcription factor 14, partial
SwissprotO647473e-75WRK35_ARATH; Probable WRKY transcription factor 35
TrEMBLA0A2H3X8H01e-170A0A2H3X8H0_PHODC; probable WRKY transcription factor 14
STRINGXP_008779946.11e-171(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25923888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.12e-66WRKY DNA-binding protein 35
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]