PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s906271g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family ERF
Protein Properties Length: 384aa    MW: 42101.8 Da    PI: 9.6421
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s906271g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.97.1e-20183231355
                AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        ++GVr+++ +g+WvAeIr p++   r+r++lg+f+taeeAa a++ a+  l+g
  PDK_30s906271g001 183 FRGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFDTAEEAAMAYDMAAYTLRG 231
                        8******9.**********955...5***********************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.10E-23181241No hitNo description
SMARTSM003807.1E-37182245IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-31182240IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-22182240IPR016177DNA-binding domain
PROSITE profilePS5103222.642182239IPR001471AP2/ERF domain
PfamPF008476.5E-14183231IPR001471AP2/ERF domain
PRINTSPR003675.8E-11183194IPR001471AP2/ERF domain
PRINTSPR003675.8E-11205221IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MEDRLPKVDR SELNAVMVMP PDSHHHHHFP SSPKNSILNF LDPKAECLTE SPPVELDGMA  60
NTSQVVPPPS CSSSSRNSSS SYPPMAPKPP PLTFFLQKEA PVEPSTLLSP RKIPLSSAHL  120
HINLQMHQKL QKPEGLQLHR LHHQGSINSL SSIALETPTK GRRGGSTTVS SHRQQQQPAA  180
KLFRGVRQRH WGKWVAEIRL PRNRTRVWLG TFDTAEEAAM AYDMAAYTLR GDLAHLNFPH  240
LKDQLRDAAS EKFSHPHAAT ASLLEAKLKA FRNSSSSSAF PSLASNQPKQ LPEKGSLRMC  300
LGGECIPPVK KQKKSGTDEE AASTSITSTW SNKKELPSDA GGRKAVQQEL ITSAGDADGV  360
LLSRMPSLDM DMIWDSLPIA AVDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-191832401573Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008778713.20.0ethylene-responsive transcription factor ERF062-like
TrEMBLA0A2H3X5M40.0A0A2H3X5M4_PHODC; ethylene-responsive transcription factor ERF062-like
STRINGXP_008778713.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2292046
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13620.13e-31ERF family protein