PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s907721g005
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family GRAS
Protein Properties Length: 380aa    MW: 41866.3 Da    PI: 7.9887
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s907721g005genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS265.51.8e-81103791374
               GRAS   1 lvelLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.........sseelaalk 82 
                        lv++L+++A++v++g+   a+ +L+rl+++  sp+g+p+ R a+yf+eAL++ l +  s+  ++ +p ++++           s+ +l++lk
  PDK_30s907721g005  10 LVDQLFKAAKMVEAGESDGARGILTRLNHQlPSPQGKPVLRSAFYFKEALNRILGDAASNSTQSPSPAHARRAFpnpitcaleSVLKLTSLK 101
                        6899************************998*******************999988555555555544444333677888877777788889 PP

               GRAS  83 lfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesgskeeleetgerLakfAee 171
                        +fs+vsPil f+++t+ qa+le+++g++++Hi+Df+++ G++W a++q+La+R+   +gpp+lR+ +++spe++++  le     La  A +
  PDK_30s907721g005 102 TFSDVSPILMFTNFTCIQALLESLAGADCIHIVDFNVGSGTHWSAFMQELAQRSctaGGPPMLRMSVFVSPEADRSFDLELACGTLAFWAGR 193
                        9*****************************************************9999********************************** PP

               GRAS 172 lgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealey 263
                        l++pfefnv+   +l+++++ ++r   +  +aVnl +   + l       s   ++L lvk+l Pkvv+ v+   d+++ sF ++fl+a++ 
  PDK_30s907721g005 194 LNIPFEFNVM---NLDNFDPLAIRSLVDAPIAVNLPVCSAHNL-------S--LTLLGLVKQLTPKVVISVDLGRDRSELSFSHHFLHAFQS 273
                        *********8...66666666666667999*****99777766.......2..468************************************ PP

               GRAS 264 ysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveees 355
                        +++l++s++a  ++  e+++k+Er+l++++i++ v  ++++      ++  Wr  + +aGF p+++s++++ qa +ll++v+++g++ve+++
  PDK_30s907721g005 274 CMVLLNSFDAA-GASPEAATKIERFLVRPRIESSVLGRHRA----GDKMLPWRILFASAGFVPLQFSSTTELQAVCLLQRVPVRGFHVEKRE 360
                        ********988.67779******************999988....78899****************************************** PP

               GRAS 356 gslvlgWkdrpLvsvSaWr 374
                        gsl+l+W++++LvsvSaWr
  PDK_30s907721g005 361 GSLFLYWQHQELVSVSAWR 379
                        ******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098537.1291359IPR005202Transcription factor GRAS
PfamPF035146.3E-7910379IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MTRPQQEQAL VDQLFKAAKM VEAGESDGAR GILTRLNHQL PSPQGKPVLR SAFYFKEALN  60
RILGDAASNS TQSPSPAHAR RAFPNPITCA LESVLKLTSL KTFSDVSPIL MFTNFTCIQA  120
LLESLAGADC IHIVDFNVGS GTHWSAFMQE LAQRSCTAGG PPMLRMSVFV SPEADRSFDL  180
ELACGTLAFW AGRLNIPFEF NVMNLDNFDP LAIRSLVDAP IAVNLPVCSA HNLSLTLLGL  240
VKQLTPKVVI SVDLGRDRSE LSFSHHFLHA FQSCMVLLNS FDAAGASPEA ATKIERFLVR  300
PRIESSVLGR HRAGDKMLPW RILFASAGFV PLQFSSTTEL QAVCLLQRVP VRGFHVEKRE  360
GSLFLYWQHQ ELVSVSAWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-271637825378Protein SCARECROW
5b3h_A1e-271637824377Protein SCARECROW
5b3h_D1e-271637824377Protein SCARECROW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008786976.10.0scarecrow-like protein 27
TrEMBLA0A2H3XPQ90.0A0A2H3XPQ9_PHODC; scarecrow-like protein 27
STRINGXP_008786976.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20203796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.14e-88GRAS family protein