PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s909501g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family bHLH
Protein Properties Length: 187aa    MW: 20891.9 Da    PI: 5.3988
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s909501g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.30.0001531483855
                       STCHHHHHHHHHHHHHHH CS
                HLH 38 lsKaeiLekAveYIksLq 55
                       ++Ka++L  A+eY+k+Lq
  PDK_30s909501g002 31 MDKASVLGDAIEYVKQLQ 48
                       79***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.96E-62762IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.4E-83061IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516719.377109187IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MARGGPKNAQ NREKIRYLYL FKFFGNDSLD MDKASVLGDA IEYVKQLQEK VKTLEEQNTK  60
RTVESAVLVK KPQLSSEDDG SSWDENCEGL PSGESLPEIE AKMSENSVLV KIYCEKRSGV  120
LLKALSEIEK LHLNVINASV IPFASSHLDI TVVAQIDADF SMTVKDVVKK LNSAFRQFMG  180
RCQDSLV
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008785756.11e-100transcription factor bHLH18-like
SwissprotQ9T0723e-41BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A2H3XMA82e-99A0A2H3XMA8_PHODC; transcription factor bHLH18-like
STRINGXP_008785756.11e-100(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42133572
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-43bHLH family protein