PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s910611g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family ERF
Protein Properties Length: 255aa    MW: 27986.3 Da    PI: 7.2951
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s910611g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.17.9e-121459755
                AP2  7 rwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                       r++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  PDK_30s910611g001 14 RRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 59
                       8999********988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103216.529867IPR001471AP2/ERF domain
SMARTSM003803.6E-271473IPR001471AP2/ERF domain
CDDcd000188.07E-221469No hitNo description
PfamPF008471.0E-61459IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-151567IPR001471AP2/ERF domain
SuperFamilySSF541715.17E-151568IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MKTMSRQEYV AHLRRHHQHG RWQARIGRVA GNKDLYLGTF STQEEAAEAY DIAAIKFRGV  60
NAVTNFDITR YDVEKIMASS TLLSGELARR TKAIEAGIDA SSTQKSRREL DLAEENNSCG  120
SDWKMVLYQS PQHISQPSES LNHNPVASMD DYRSSTPLLA ALHGTAGMET VSSVEGLEDS  180
GKIGNKHISN SSSLVTSLGS SREGSPDRPG LSMLYSKPSP NFVRDAPMSS WIPSTQIRPT  240
ISLAQMPVFA AWNDA
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008785732.11e-180AP2-like ethylene-responsive transcription factor CRL5
SwissprotQ84Z024e-65CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A2H3XLU51e-179A0A2H3XLU5_PHODC; AP2-like ethylene-responsive transcription factor CRL5
STRINGXP_008785732.11e-179(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94838133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.13e-45AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]