PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s910961g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family bHLH
Protein Properties Length: 125aa    MW: 13879.1 Da    PI: 9.231
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s910961g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.30.0003214491454
                       HHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH 14 driNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                       d+i ++ ++L++l+ +      +K + a++L++++ YIk L
  PDK_30s910961g001 14 DKIGERVAKLQQLVSPF-----GKSDTASVLQETTGYIKFL 49
                       89999999******998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.461149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.64E-5754No hitNo description
SMARTSM003530.0084855IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-11864IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-8959IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
MLTRFESNEQ EKKDKIGERV AKLQQLVSPF GKSDTASVLQ ETTGYIKFLH DQLQVLSAPY  60
LRARTPTGKT EGGQDLPEAA QLERIPFGQL ETIPCVKNLA VRFVLQKIPG KNGSDVIPLL  120
VLRSC
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008801209.13e-36transcription factor bHLH153-like
RefseqXP_026663597.13e-36transcription factor bHLH153-like
RefseqXP_026663598.13e-36transcription factor bHLH153-like
SwissprotQ7XJU22e-19BH153_ARATH; Transcription factor bHLH153
TrEMBLA0A2H3ZVT96e-35A0A2H3ZVT9_PHODC; transcription factor bHLH153-like
STRINGXP_008801208.11e-35(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5272812
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05710.59e-22bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]