PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s912081g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB_related
Protein Properties Length: 243aa    MW: 28035 Da    PI: 8.6802
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s912081g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.21.4e-165398148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       rg+ + eE++l+++++k+lG++ W++Ia +++ gRt++++k++w+++l
  PDK_30s912081g002 53 RGNISHEEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTVL 98
                       78999*****************.*********.************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.7E-113059IPR009057Homeodomain-like
SuperFamilySSF466899.84E-2131105IPR009057Homeodomain-like
PROSITE profilePS500904.1353347IPR017877Myb-like domain
PROSITE profilePS5129426.34748102IPR017930Myb domain
SMARTSM007172.1E-1652100IPR001005SANT/Myb domain
PfamPF002495.9E-155398IPR001005SANT/Myb domain
CDDcd001674.54E-125798No hitNo description
Gene3DG3DSA:1.10.10.601.9E-216099IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MEKGGGGRFP SEQRPFSLPA TLTIHSKDSH CLNRCGRSCR LRWLNYLRPD IKRGNISHEE  60
EDLIIRLHKL LGNRWSLIAG RLPGRTDNEI KNYWNTVLKK KAQVRSVPLT NLMCSNQDEE  120
RKSKSKTRVR APPFENPARC SEAELSLDRH GNQTVHKNEL KALVMDDMAP ESSLLAPQDH  180
DLLNLVTGCN TDGLFRPCLL DFELFQLVGD NIQQDIGDRN NVSMRMIETF NYINLYWIRV  240
VFY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-202910235108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008784295.21e-137transcription factor MYB23-like
TrEMBLA0A2H3XIT21e-135A0A2H3XIT2_PHODC; transcription factor MYB23-like
STRINGXP_008784295.11e-136(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2548035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14750.15e-37myb domain protein 66