PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s912081g003

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

MYB_related

Protein Properties

Length: 242aa MW: 27532.2 Da PI: 7.1159

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s912081g003	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.1	1.7e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd +l+ ++k +G g+W++ +++ g++R++k+c++rw++yl PDK_30s912081g003 14 RGAWTAEEDRILKSYIKDHGEGRWRSLPKKAGLKRCGKSCRLRWLNYL 61 89********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	24.908	9	65	IPR017930	Myb domain
SMART	SM00717	9.9E-15	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	1.2E-15	14	61	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.89E-21	15	88	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.0E-25	15	68	IPR009057	Homeodomain-like
CDD	cd00167	3.95E-11	16	61	No hit	No description
PROSITE profile	PS50090	4.24	62	112	IPR017877	Myb-like domain
SMART	SM00717	71	66	114	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.3E-8	69	105	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence Send to blast
MGRKPCCSGE DLNRGAWTAE EDRILKSYIK DHGEGRWRSL PKKAGLKRCG KSCRLRWLNY 60 LRPDIKRGNI TDEEEDLIIR LHNLLGNRKK VQGQHQLKRC EASINEAPQN YLVRTKAIRC 120 SKRFITPQQH ITQKQERNAA IEPAMIGELA TEHSSVTPKE DTWWDVLQGL DTSKASPSEA 180 ADFDSMQLCG SESPCNHHTR REDYLKGVFE EMSDAALPDV ELELKSLANF LGCEEGWLAG 240 EI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	3e-13	11	88	24	100	MYB TRANSFORMING PROTEIN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008784297.1	1e-175	transcription factor TT2-like isoform X2
TrEMBL	A0A2H3XIG8	1e-173	A0A2H3XIG8_PHODC; transcription factor TT2-like isoform X2
STRING	XP_008784296.1	1e-173	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP116	37	448

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22640.1	1e-42	myb domain protein 3