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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
PDK_30s915541g003 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 236aa MW: 25916.8 Da PI: 9.6667 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PDK_30s915541g003 | genome | PDK | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 125.9 | 9.2e-39 | 39 | 236 | 1 | 228 |
GAGA_bind 1 mdddgsre.rnkgyyepaaslkenlglqlmssiaerdaki.rernlalsekkaavaerd.........maflqrdkalaernkalverdnkl 81
mdd+g rn++yye+ lk+nlglqlmss+aer+a+ n + +rd m+f rd ++ + r+nk+
PDK_30s915541g003 39 MDDNGGLGmRNWAYYEQP--LKRNLGLQLMSSVAERNAAKpLLPNG-------GFFHRDcsmpeppvaMEF-ARDGWIGH-------RENKM 113
899988888********9..*****************976344444.......444444444444477999.89999998.......9**** PP
GAGA_bind 82 lalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksek 173
+++++ + + ++vl++++ ++ + l+++ + k ++ p+ + + + ke++ kk ++++k++k kk+kk +++
PDK_30s915541g003 114 VHMMPLNPN--------YSVLPDAHGAQAFPM-----LQPPEPP-----KEDKIPLMDDPGSRKEAPLKK----KAQAKAPKPKKPKKVTAA 183
*****6654........899********9999.....6665555.....346788888888888877766....566788888888887767 PP
GAGA_bind 174 skkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnG 228
+++++ + +r ++ +ks+d+v+ng++lD+s++P+PvCsCtGa +qCY+WG G
PDK_30s915541g003 184 RNETSNGSV--SRGRNVRKSLDVVINGIDLDISGIPTPVCSCTGARQQCYRWGVG 236
666666655..79****************************************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 236 aa
Download sequence Send
to blast |
MGGEGPASCK TKKIREDEQH VHVGVETILS EVRPTAAFMD DNGGLGMRNW AYYEQPLKRN 60
LGLQLMSSVA ERNAAKPLLP NGGFFHRDCS MPEPPVAMEF ARDGWIGHRE NKMVHMMPLN 120
PNYSVLPDAH GAQAFPMLQP PEPPKEDKIP LMDDPGSRKE APLKKKAQAK APKPKKPKKV 180
TAARNETSNG SVSRGRNVRK SLDVVINGID LDISGIPTPV CSCTGARQQC YRWGVG
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Positively regulates the homeotic gene BKN3. {ECO:0000269|PubMed:12795701}. |
