PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s917711g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family TALE
Protein Properties Length: 173aa    MW: 19732 Da    PI: 6.2863
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s917711g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.87.7e-081231552254
                        SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
           Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         +yp+++++++L +++gL+ +q+ +WF N+R +
  PDK_30s917711g001 123 WPYPTEDDKARLVQETGLQLKQINNWFINQRKR 155
                        58*****************************87 PP
2ELK30.48.6e-117697122
                ELK  1 ELKhqLlrKYsgyLgsLkqEFs 22
                       ELKh+L+++Y+++++++++E++
  PDK_30s917711g001 76 ELKHELKQGYKEKIVDIREEIL 97
                       9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512139.9697696IPR005539ELK domain
PfamPF037893.1E-77697IPR005539ELK domain
SMARTSM011886.1E-47697IPR005539ELK domain
PROSITE profilePS5007111.61296159IPR001356Homeobox domain
SMARTSM003891.0E-1098163IPR001356Homeobox domain
SuperFamilySSF466891.24E-1698162IPR009057Homeodomain-like
CDDcd000865.89E-1199160No hitNo description
Gene3DG3DSA:1.10.10.601.8E-25103160IPR009057Homeodomain-like
PfamPF059208.0E-18116155IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MEAVMACWEL EQSLQNLTGV SPGEGTGATM SDDDDDQADS DTNLFDGGLD GPDSMGFGPL  60
VPTESERSLM ERVRQELKHE LKQGYKEKIV DIREEILRKR RAGKLPGDST SLLKSWWQSH  120
SKWPYPTEDD KARLVQETGL QLKQINNWFI NQRKRNWHSN PSSSTALKSK RKR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A6e-1599163872Homeobox protein PKNOX1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1152172RKRNWHSNPSSSTALKSKRKR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008806313.11e-126homeobox protein knotted-1-like 2 isoform X2
SwissprotP480001e-109KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLA0A2H3YZN91e-124A0A2H3YZN9_PHODC; homeobox protein knotted-1-like 2 isoform X2
STRINGXP_008806312.11e-124(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56438169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.21e-105KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]