PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s917811g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

MYB_related

Protein Properties

Length: 300aa MW: 32957 Da PI: 8.7858

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s917811g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	36.1	1.5e-11	71	115	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+ E+ ++ + ++ G+g+W+ I+r + +Rt q+ s+ qky PDK_30s917811g001 71 PWTEHEHRMFLLGLQKCGKGDWRGISRDFVVTRTSTQVASHAQKY 115 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.60.10	6.4E-4	3	21	IPR001878	Zinc finger, CCHC-type
PROSITE profile	PS50158	9.175	3	20	IPR001878	Zinc finger, CCHC-type
TIGRFAMs	TIGR01557	3.4E-17	67	119	IPR006447	Myb domain, plants
PROSITE profile	PS51294	12.928	68	120	IPR017930	Myb domain
SMART	SM00717	7.6E-9	68	118	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.73E-14	68	121	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.7E-10	70	114	IPR009057	Homeodomain-like
Pfam	PF00249	8.4E-9	71	115	IPR001005	SANT/Myb domain
CDD	cd00167	5.25E-8	71	116	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MTRRCSHCGH NGHNSRTCPN RGVKLFGVRL TDGSIRKSVS MGNLAHYAGS GSGKIGFFFA 60 RGCVGVNRGV PWTEHEHRMF LLGLQKCGKG DWRGISRDFV VTRTSTQVAS HAQKYFIRQT 120 NASRRKRRSS LFDMVPDEPA DGQLYPMVSH EPEAQSNNPL PAPPAQDEEW ESMDSNSNDG 180 EGPAPKPESL PCSYPVFFPT YFSPVFPFPF PFWPGYGAVD TVEKRHEIVK PTAMYSKVPI 240 NVDELVGMSQ LSLGESSGET GSSSLSLKLV GRSDRQSAFH AKAPTYGSMV DSNTSPIHAV

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269\|PubMed:12172034, ECO:0000269\|PubMed:20130099}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269\|PubMed:12172034, ECO:0000269\|PubMed:20130099}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC079890	2e-47	AC079890.13 Oryza sativa chromosome 10 BAC OSJNBb0089A17 genomic sequence, complete sequence.
GenBank	AK101062	2e-47	AK101062.1 Oryza sativa Japonica Group cDNA clone:J033022I10, full insert sequence.
GenBank	AP014966	2e-47	AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
GenBank	AY151044	2e-47	AY151044.1 Oryza sativa (japonica cultivar-group) transcription factor MYBS3 mRNA, complete cds.
GenBank	EU837254	2e-47	EU837254.1 Oryza sativa Japonica Group clone KCS344D12 myb transcription factor mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008790110.1	0.0	transcription factor MYBS3-like
Swissprot	Q7XC57	1e-113	MYBS3_ORYSJ; Transcription factor MYBS3
TrEMBL	A0A2H3XX81	0.0	A0A2H3XX81_PHODC; transcription factor MYBS3-like
STRING	XP_008790110.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1939	37	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47390.1	1e-71	MYB_related family protein

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992] Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Su CF, et al. A novel MYBS3-dependent pathway confers cold tolerance in rice. Plant Physiol., 2010. 153(1): p. 145-58 [PMID:20130099]