PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s918321g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family bHLH
Protein Properties Length: 206aa    MW: 22817 Da    PI: 6.9178
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s918321g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.27.2e-0995137754
                        HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        ++ r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  PDK_30s918321g001  95 IAARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIRYVKFL 137
                        56799*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.13588137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.07E-1493147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.5E-1494143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-1395146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-696137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.52E-6111142No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010197Biological Processpolar nucleus fusion
GO:0010500Biological Processtransmitting tissue development
GO:0048462Biological Processcarpel formation
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MGNHLLFDHA PLELIHPIDP FQAHVPSPSL PAAAQMEVQS KVEGGEHEED EEERLGAMKE  60
MMYKIASMQP VDIDPSTIKK PQRRNVRISD DPQSIAARHR RERISERIRI LQRLVPGGTK  120
MDTASMLDEA IRYVKFLKRQ VHELQSSSPP PHIAQVIAGH PASSMDWPVR WNPHASSSSS  180
TMGAPPELGF CHLFGSNGLV GGNACV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008803692.11e-137transcription factor HEC3-like
TrEMBLA0A2H3YTL51e-135A0A2H3YTL5_PHODC; transcription factor HEC3-like
STRINGXP_008803692.11e-136(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90513246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09750.12e-40bHLH family protein