PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s921311g005

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

NAC

Protein Properties

Length: 260aa MW: 29586.3 Da PI: 8.42

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s921311g005	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	127.6	1e-39	5	154	2	127
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpk.......................kvka.eekewyfFskrdkky 68 ppG+rF Pt+eel+ +yL++k+e+k+l++ e i+ v++y+++P++Lp+ + + + ++w+fF++r++++ PDK_30s921311g005 5 PPGLRFYPTEEELLGFYLRNKLENKRLKEMERyIPVVGVYSYDPEQLPReilhlldlqmclfsillttmsgeA-SIrDPEQWFFFCPRQERE 95 8***********************7776656***********6699****9999998765531.2224569******* PP NAM 69 atgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127 a+g +++r+t sgyWk tg+ +vls+++ +g kkt+vfy+grap+g+kt+W m+ey+ PDK_30s921311g005 96 ARGGKPTRTTPSGYWKVTGSPGHVLSSQNLRIGWKKTMVFYTGRAPTGTKTKWKMNEYK 154 **********************99999*************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.62E-40	3	182	IPR003441	NAC domain
PROSITE profile	PS51005	41.508	4	182	IPR003441	NAC domain
Pfam	PF02365	7.3E-23	5	154	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
MTDQPPGLRF YPTEEELLGF YLRNKLENKR LKEMERYIPV VGVYSYDPEQ LPREILHLLD 60 LQMCLFSILL TTMSGEASIR DPEQWFFFCP RQEREARGGK PTRTTPSGYW KVTGSPGHVL 120 SSQNLRIGWK KTMVFYTGRA PTGTKTKWKM NEYKALEEAA ASTSTTPPRL RNEFSVCRVY 180 IKSGTLRSFD RRPSASIAMN YSESQRRNPE ASSSANPQIA DQRTSSHGSS SPGDDGSQPL 240 AAGATFDWDM LEDIIYPEQF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-29	5	185	18	168	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-29	5	185	18	168	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-29	5	185	18	168	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-29	5	185	18	168	NO APICAL MERISTEM PROTEIN
3swm_A	6e-29	5	185	21	171	NAC domain-containing protein 19
3swm_B	6e-29	5	185	21	171	NAC domain-containing protein 19
3swm_C	6e-29	5	185	21	171	NAC domain-containing protein 19
3swm_D	6e-29	5	185	21	171	NAC domain-containing protein 19
3swp_A	6e-29	5	185	21	171	NAC domain-containing protein 19
3swp_B	6e-29	5	185	21	171	NAC domain-containing protein 19
3swp_C	6e-29	5	185	21	171	NAC domain-containing protein 19
3swp_D	6e-29	5	185	21	171	NAC domain-containing protein 19
4dul_A	5e-29	5	185	18	168	NAC domain-containing protein 19
4dul_B	5e-29	5	185	18	168	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010912317.1	1e-139	NAC domain-containing protein 90-like
Swissprot	Q9FMR3	7e-68	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A3Q0HW39	1e-137	A0A3Q0HW39_PHODC; NAC domain-containing protein 90-like
STRING	XP_008784235.1	1e-174	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1005	38	140

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	4e-66	NAC domain containing protein 90

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]