PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s922991g002

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

SRS

Protein Properties

Length: 135aa MW: 13819.2 Da PI: 5.8012

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s922991g002	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	84.7	2.3e-26	2	55	101	154
DUF702 101 etsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++ s+P+evss+avfrc rvs vdd+e+e+aYqtavsigGhvfkGiLydqG+++ PDK_30s922991g002 2 DALSFPAEVSSPAVFRCGRVSPVDDAEDEFAYQTAVSIGGHVFKGILYDQGPDS 55 5678***********************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	4.0E-24	5	54	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01624	3.1E-26	6	53	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010051	Biological Process	xylem and phloem pattern formation
GO:0010252	Biological Process	auxin homeostasis
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0048479	Biological Process	style development
GO:0048480	Biological Process	stigma development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 135 aa Download sequence Send to blast
MDALSFPAEV SSPAVFRCGR VSPVDDAEDE FAYQTAVSIG GHVFKGILYD QGPDSPFQHP 60 TTPRHLHYGE SSSSSAAAGA VTTAAALAAS LAASTSAGAS TAPSSTGLLD PSSLYPAPLS 120 AFMAGTQFFP HHHRP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:12361963, ECO:0000269\|PubMed:16740145, ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18811619, ECO:0000269\|PubMed:20154152, ECO:0000269\|PubMed:22318676}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00613	PBM	Transfer from AT3G51060	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269\|PubMed:21976484}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017701922.1	2e-64	protein SHI RELATED SEQUENCE 1-like
Swissprot	Q9SD40	3e-29	SRS1_ARATH; Protein SHI RELATED SEQUENCE 1
TrEMBL	A0A2H3ZAE4	4e-63	A0A2H3ZAE4_PHODC; protein SHI RELATED SEQUENCE 1-like
STRING	XP_008810878.1	7e-64	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1354	35	124

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75520.1	2e-24	SHI-related sequence 5

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]