PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s929081g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family LBD
Protein Properties Length: 188aa    MW: 20500.7 Da    PI: 9.0835
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s929081g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260146.95.6e-46131121100
             DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                        +CaaCk+lrr+Ca+dC++apyfpa++p+kfanvhk+FGasnv+kll++lp ++r+da+sslvyeA+ar+rdPvyG+vg i++lq+q+e l++
  PDK_30s929081g002  13 PCAACKLLRRRCAQDCIFAPYFPADEPQKFANVHKVFGASNVSKLLQELPAHHRSDAVSSLVYEANARVRDPVYGCVGAISSLQRQIEALQT 104
                        7******************************************************************************************* PP

             DUF260  93 elallkee 100
                        +la +++e
  PDK_30s929081g002 105 QLAIAQAE 112
                        ***99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.91812113IPR004883Lateral organ boundaries, LOB
PfamPF031954.0E-4513110IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MRELGRKQGT VSPCAACKLL RRRCAQDCIF APYFPADEPQ KFANVHKVFG ASNVSKLLQE  60
LPAHHRSDAV SSLVYEANAR VRDPVYGCVG AISSLQRQIE ALQTQLAIAQ AEMVHLRTRH  120
AAYLAHLSSR SPMVVGMTST GAGTASSSMS LPKQQLMKPD QHGPKPLFAL DMVMVDQTSL  180
GEPPIWSC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-5191147112LOB family transfactor Ramosa2.1
5ly0_B3e-5191147112LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008787332.11e-139LOB domain-containing protein 4
SwissprotQ9SHE97e-65LBD4_ARATH; LOB domain-containing protein 4
TrEMBLA0A2H3XQP21e-137A0A2H3XQP2_PHODC; LOB domain-containing protein 4
STRINGXP_008787332.11e-138(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88238150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31320.16e-66LOB domain-containing protein 4