PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s932191g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family WRKY
Protein Properties Length: 364aa    MW: 40576.1 Da    PI: 7.6445
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s932191g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY85.93.7e-27130189258
                        --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                        dDg++WrKYGqK++ g+++pr+YYrC+++   gC +kk v++s+ dp v++itY geH++
  PDK_30s932191g002 130 DDGFSWRKYGQKDILGAKYPRGYYRCSHRnsrGCLAKKLVQKSDADPAVFDITYWGEHTC 189
                        8***************************98899*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.032124187IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.8E-26124190IPR003657WRKY domain
SuperFamilySSF1182903.53E-24127189IPR003657WRKY domain
SMARTSM007743.3E-38129191IPR003657WRKY domain
PfamPF031063.1E-25130189IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MEKGTSWDLS LLLKALTQGE EQIRQLQAHL DDPSSAEQSK SLAQQIRFTF TKAISMAKLI  60
SADSARQPPC PNNTSAGSPR STGRRPRSEN SEKAFRERER RETSNKRRAL PRWSGQVRIS  120
SGATAEGPID DGFSWRKYGQ KDILGAKYPR GYYRCSHRNS RGCLAKKLVQ KSDADPAVFD  180
ITYWGEHTCL QRPRAHSASA APEPDMQGDQ QNPPLEHDKQ HPQYDQQLLL SFRTGLKVKT  240
EGLEREDQDL TSSSFSFPST PVSSLKHENQ IFSAPPTLEN KLTGSFSPNF VSPTTSGSSH  300
FSVLCQIDNH GDGTAPHTSE SDLAGIISTS ASVTNFPLLD IDFMLEPLMD FEPNFPFHNS  360
NFFR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-18129189868OsWRKY45
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008791211.30.0probable WRKY transcription factor 41
TrEMBLA0A2H3XZP80.0A0A2H3XZP8_PHODC; probable WRKY transcription factor 41
STRINGXP_008791211.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108638131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.19e-45WRKY family protein