PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s932621g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family M-type_MADS
Protein Properties Length: 62aa    MW: 7182.38 Da    PI: 10.8468
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s932621g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF102.21.8e-321059251
                       ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
             SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                       rienk+nrqvtfskRr g+lKKA+E+SvLCdaeva+iifs++gklyey++
  PDK_30s932621g001 10 RIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIIFSTKGKLYEYAT 59
                       8***********************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.0E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.87161IPR002100Transcription factor, MADS-box
CDDcd002651.44E-36261No hitNo description
SuperFamilySSF554551.01E-29261IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-32323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003195.7E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-323859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 62 aa     Download sequence    Send to blast
MGRGRVQLRR IENKINRQVT FSKRRSGLLK KAHEISVLCD AEVALIIFST KGKLYEYATD  60
SW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-21159159MEF2C
5f28_B2e-21159159MEF2C
5f28_C2e-21159159MEF2C
5f28_D2e-21159159MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4118407e-99AF411840.1 Elaeis guineensis MADS box transcription factor (SQUA1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020091887.12e-36MADS-box transcription factor 14 isoform X2
SwissprotO223282e-35AGL8_SOLCO; Agamous-like MADS-box protein AGL8 homolog
TrEMBLA0A438I3883e-36A0A438I388_VITVI; Agamous-like MADS-box protein AGL8
TrEMBLA0A438JYR53e-36A0A438JYR5_VITVI; Agamous-like MADS-box protein AGL8
STRINGXP_004172815.18e-37(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.13e-37AGAMOUS-like 8