PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s935001g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

bHLH

Protein Properties

Length: 92aa MW: 9874.41 Da PI: 11.4443

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s935001g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.3	1.8e-10	63	89	3	29
HHHHHHHHHHHHHHHHHHHHHHCTSCC CS HLH 3 rahnerErrRRdriNsafeeLrellPk 29 ++h+e+ErrRR+riN + +Lr+++P PDK_30s935001g001 63 KSHSEAERRRRQRINGHLTTLRSMIPC 89 68************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.033	60	92	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.54E-8	62	91	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.79E-8	63	89	No hit	No description
Pfam	PF00010	4.5E-8	63	89	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.1E-8	64	90	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 92 aa Download sequence Send to blast
MGSIPLGDYG VLRGFREAPG FAAGTSATLV LDGERGELVR TPARVGKKGK GGVLDARVAM 60 ALKSHSEAER RRRQRINGHL TTLRSMIPCT DK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008783898.1	3e-60	transcription factor bHLH30-like
TrEMBL	A0A2H3XHH8	7e-59	A0A2H3XHH8_PHODC; transcription factor bHLH30-like
STRING	XP_008783898.1	1e-59	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP20999	6	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56770.1	9e-08	bHLH family protein