PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s935161g004
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family E2F/DP
Protein Properties Length: 156aa    MW: 18047.4 Da    PI: 8.441
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s935161g004genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP89.62.1e-281496271
            E2F_TDP  2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71
                       ++++Lr++++k   ++ek+e+ g++t+neva+eLv+e                d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  PDK_30s935161g004 14 SGRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEftdpnsnvvspdqqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 96
                       689********...*****999*******************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.2E-479101IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.3E-341396IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023195.6E-261596IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467857.35E-231697IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF1440747.32E-13102155No hitNo description
SMARTSM011382.2E-4103156IPR014889Transcription factor DP, C-terminal
PfamPF087811.6E-5132156IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MKKRGTRAVG GDKSGRGLRQ FSMKVCEKVE SKGRTTYNEV ADELVAEFTD PNSNVVSPDQ  60
QQYDEKNIRR RVYDALNVLM AMDIISKDKK EIQWKGLPRT SLNDIEELKA ERVGLKSRIE  120
RKTAYLQDLQ DQTRPHATVE VEISEDMQLV HFDFNR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B4e-427101193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008775137.11e-103transcription factor-like protein DPB
SwissprotQ9FNY25e-87DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A2H3WXE31e-102A0A2H3WXE3_PHODC; transcription factor-like protein DPB
STRINGXP_008775137.11e-103(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128338109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.12e-89Transcription factor DP