PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s935191g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

Trihelix

Protein Properties

Length: 182aa MW: 21354.2 Da PI: 9.937

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s935191g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	65.2	1.4e-20	3	64	1	65
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkik 65 +W+ +e+++Li++r ++e++++ +k++k+ We v+++mrerg++r+p qCk+kwen ryk++ PDK_30s935191g001 3 QWSPEETRDLIAIRGDLERDFNVSKRNKTMWEVVAARMRERGYRRTPDQCKCKWEN---RYKACM 64 7******************************************************8...666654 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.793	1	60	IPR017877	Myb-like domain
Pfam	PF13837	1.8E-16	2	62	No hit	No description
CDD	cd12203	6.85E-22	2	61	No hit	No description
Gene3D	G3DSA:1.10.10.60	6.6E-5	3	59	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 182 aa Download sequence Send to blast
MPQWSPEETR DLIAIRGDLE RDFNVSKRNK TMWEVVAARM RERGYRRTPD QCKCKWENRY 60 KACMWHPNWK GIGDSGSYWL NFQELSPLRR RAANRTLYTG KETADPETGK QCPFFEELHA 120 VFTERARNMQ RELLESESGA SHSKKKLKRL GADKSSDAQE TCSVNCLSLN QELPILRRNR 180 RG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008802948.1	5e-68	trihelix transcription factor GT-3b-like
TrEMBL	A0A2H3YS04	1e-66	A0A2H3YS04_PHODC; trihelix transcription factor GT-3b-like
STRING	XP_008802948.1	2e-67	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10688	30	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38250.1	3e-22	Trihelix family protein