PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s936561g006

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

bHLH

Protein Properties

Length: 485aa MW: 52096.1 Da PI: 6.629

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s936561g006	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.6	5.1e-09	336	384	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L+el+P + sk Ka +L + ++Y++sLq PDK_30s936561g006 336 NSHSLAERVRREKISERMKFLQELVPGC----SKVTGKAVMLDEIINYVQSLQ 384 58***********************9....556***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.62E-11	331	388	No hit	No description
SuperFamily	SSF47459	7.07E-17	331	402	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.459	333	383	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.8E-16	334	401	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.7E-6	336	384	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.9E-10	339	389	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 485 aa Download sequence Send to blast
MDINEKDKFG LEKNEDHPNY HSLGMSADWQ IGNPSMALVS APPMGSSQCP SVSMVECFSP 60 SLWIPSVHAQ SLGFCGNNVQ SSTAASNSMP IGKPVPRPLR LDIGWNPSDC SSKGSGIFLQ 120 TGTGVLPPRL SHFPTDSAFI ERAARFSCFD GGNLGSMMNP FSTPESLSSY SNTPKGVPGA 180 QIQKSEMNTT EAHMDASLPI DHGSSSRSPM KEQRDKGTSH GAGVSSNESG EPEFSGGGQE 240 EAPNLASAAG DSSSTGLAAK KRIRPSQDME SDQVGGSGPQ QSVENTMDSV DTKQRAEQNS 300 STIATIKPNG KQAKDSSDAS KEDYVHVRAR RGQATNSHSL AERVRREKIS ERMKFLQELV 360 PGCSKVTGKA VMLDEIINYV QSLQRQVEFL SMKLAAVNPR VDFNIEGLLS KDLHQFRDGP 420 SSAIGFSPDV IHPQLHPSPQ GLVQVGMSGI VNHSDALRRA INAQLTSMNG HKEPMPQRYM 480 SDIAQ

Sequence ? help Back to Top

Protein Sequence Length: 485 aa Download sequence Send to blast

MDINEKDKFG LEKNEDHPNY HSLGMSADWQ IGNPSMALVS APPMGSSQCP SVSMVECFSP  60
SLWIPSVHAQ SLGFCGNNVQ SSTAASNSMP IGKPVPRPLR LDIGWNPSDC SSKGSGIFLQ  120
TGTGVLPPRL SHFPTDSAFI ERAARFSCFD GGNLGSMMNP FSTPESLSSY SNTPKGVPGA  180
QIQKSEMNTT EAHMDASLPI DHGSSSRSPM KEQRDKGTSH GAGVSSNESG EPEFSGGGQE  240
EAPNLASAAG DSSSTGLAAK KRIRPSQDME SDQVGGSGPQ QSVENTMDSV DTKQRAEQNS  300
STIATIKPNG KQAKDSSDAS KEDYVHVRAR RGQATNSHSL AERVRREKIS ERMKFLQELV  360
PGCSKVTGKA VMLDEIINYV QSLQRQVEFL SMKLAAVNPR VDFNIEGLLS KDLHQFRDGP  420
SSAIGFSPDV IHPQLHPSPQ GLVQVGMSGI VNHSDALRRA INAQLTSMNG HKEPMPQRYM  480
SDIAQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008788970.1	0.0	transcription factor bHLH49
TrEMBL	A0A2H3XV10	0.0	A0A2H3XV10_PHODC; transcription factor bHLH49
STRING	XP_008788970.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2909	37	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	1e-103	bHLH family protein