PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s937291g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family NAC
Protein Properties Length: 333aa    MW: 38314.4 Da    PI: 4.9196
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s937291g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM174.72.6e-5481371129
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                        +ppGfrFhPtdeelv +yLkkkv+++k++l +vike+d+y++ePwdL++  ++   e++ewyfFs++dkky+tg+r+nrat +g+Wkatg+d
  PDK_30s937291g001   8 VPPGFRFHPTDEELVGYYLKKKVASQKIDL-DVIKEIDLYRIEPWDLQEwcQIGYeEQSEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRD 98 
                        69****************************.9***************954433332566********************************* PP

                NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                        k+v++ k++l+g++ktLvfykgrap+g+k+dW++heyrle
  PDK_30s937291g001  99 KAVHD-KNKLIGMRKTLVFYKGRAPNGQKSDWIIHEYRLE 137
                        *****.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-586157IPR003441NAC domain
PROSITE profilePS5100558.1268157IPR003441NAC domain
PfamPF023658.9E-289136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0048759Biological Processxylem vessel member cell differentiation
GO:1901348Biological Processpositive regulation of secondary cell wall biogenesis
GO:1990110Biological Processcallus formation
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MDSMESCVPP GFRFHPTDEE LVGYYLKKKV ASQKIDLDVI KEIDLYRIEP WDLQEWCQIG  60
YEEQSEWYFF SHKDKKYPTG TRTNRATMAG FWKATGRDKA VHDKNKLIGM RKTLVFYKGR  120
APNGQKSDWI IHEYRLESEE NGPPQEEGWV VCRAFKKRLA CPTRSVVDVW DSNYGYDEPS  180
RVISAMVNPI EYLQMQPKTL LCKQETERDR LNLLHSKQLF QLPQLESPPL PLVKQPSPLS  240
TAMENEDEEQ TRGCNSIEKV TDWRALDKFV ASQLSQEDRF SAQQVVSDFG VDSDPEDIAL  300
LLLQSGREEV GKMNGLLTSG GPECDIGICV FEK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-49515812169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00266DAPTransfer from AT2G18060Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by chitin (e.g. chitooctaose) (PubMed:17722694). Accumulates in plants exposed to callus induction medium (CIM) (PubMed:17581762). {ECO:0000269|PubMed:17581762, ECO:0000269|PubMed:17722694}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026664191.10.0NAC domain-containing protein 37-like
SwissprotQ9SL411e-139NAC37_ARATH; NAC domain-containing protein 37
TrEMBLA0A3Q0IB250.0A0A3Q0IB25_PHODC; NAC domain-containing protein 37-like
STRINGXP_008803320.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36253768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18060.11e-130vascular related NAC-domain protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Negi S,Tak H,Ganapathi TR
    Cloning and functional characterization of MusaVND1 using transgenic banana plants.
    Transgenic Res., 2015. 24(3): p. 571-85
    [PMID:25523085]
  3. Tan TT, et al.
    Transcription Factors VND1-VND3 Contribute to Cotyledon Xylem Vessel Formation.
    Plant Physiol., 2018. 176(1): p. 773-789
    [PMID:29133368]