PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s937331g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

GRF

Protein Properties

Length: 455aa MW: 49014.9 Da PI: 7.8454

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s937331g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	79.6	2.9e-25	171	215	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+ep+rCrRtDGKkWRCsr++ +++k+CErH+hrgr rsrk++e PDK_30s937331g001 171 DPEPWRCRRTDGKKWRCSRNAAPDQKYCERHMHRGRPRSRKPVEV 215 79****************************************985 PP
2	QLQ	32.3	3.2e-12	109	139	2	32
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLl 32 ++T aQ q+ +Q+l+yK++++++PvP++Ll PDK_30s937331g001 109 PLTSAQRQEIQRQALIYKHIISSVPVPSDLL 139 79***************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF08880	1.9E-7	109	139	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	15.147	109	144	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	26.215	171	215	IPR014977	WRC domain
Pfam	PF08879	3.8E-21	172	214	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 455 aa Download sequence Send to blast
METRVGLGDK KKRTRGDGER PGLGFGRGSD YIPYAPQKLI RTAGLPFLSS CTSGDGSSVP 60 TSTLSFSGSP TLFLNDDYDG GRALLPFPTP FKSPGVGMGV GGCDLRGFPL TSAQRQEIQR 120 QALIYKHIIS SVPVPSDLLI SNSPPYHLPP NLVAGRGGGG TFNLRFSNRM DPEPWRCRRT 180 DGKKWRCSRN AAPDQKYCER HMHRGRPRSR KPVEVSNTKP TSTNAPPTTA VPTNSPTIVT 240 TTTTTASLSR PLPSQSSGLF LKDELKIPFQ SLEPNEEQRC LDWMKGNNEE MESSLQWELM 300 HSKIGLTHGT IPVLQHYEDQ LTMNYAAFLN PDLCSLEENA VGNRGEAPRS FIDAGSTETP 360 AATAEVGNST SVPTTGELPL STLTLSMPST GEGTDHQIQM APVSPLGGPL GEVLQTSSAT 420 SPRQGFGAND GDSSSRGLIN ILSHGFHGSH EKTIN

Sequence ? help Back to Top

Protein Sequence Length: 455 aa Download sequence Send to blast

METRVGLGDK KKRTRGDGER PGLGFGRGSD YIPYAPQKLI RTAGLPFLSS CTSGDGSSVP  60
TSTLSFSGSP TLFLNDDYDG GRALLPFPTP FKSPGVGMGV GGCDLRGFPL TSAQRQEIQR  120
QALIYKHIIS SVPVPSDLLI SNSPPYHLPP NLVAGRGGGG TFNLRFSNRM DPEPWRCRRT  180
DGKKWRCSRN AAPDQKYCER HMHRGRPRSR KPVEVSNTKP TSTNAPPTTA VPTNSPTIVT  240
TTTTTASLSR PLPSQSSGLF LKDELKIPFQ SLEPNEEQRC LDWMKGNNEE MESSLQWELM  300
HSKIGLTHGT IPVLQHYEDQ LTMNYAAFLN PDLCSLEENA VGNRGEAPRS FIDAGSTETP  360
AATAEVGNST SVPTTGELPL STLTLSMPST GEGTDHQIQM APVSPLGGPL GEVLQTSSAT  420
SPRQGFGAND GDSSSRGLIN ILSHGFHGSH EKTIN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019702092.1	0.0	LOW QUALITY PROTEIN: growth-regulating factor 7-like
TrEMBL	A0A2H3ZCT3	0.0	A0A2H3ZCT3_PHODC; growth-regulating factor 7-like isoform X2
STRING	XP_008777916.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP22558	4	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37740.1	3e-36	growth-regulating factor 2