PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s939421g004
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family C3H
Protein Properties Length: 107aa    MW: 11622 Da    PI: 8.0376
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s939421g004genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH375.8e-125985127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                       ++ + C +++rtG C+yG +C+++H+p
  PDK_30s939421g004 59 PGVPDCAYYLRTGLCRYGLTCRYNHPP 85
                       5789*********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.2585886IPR000571Zinc finger, CCCH-type
SMARTSM003569.6E-65885IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-96085IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-66286IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-46484IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 107 aa     Download sequence    Send to blast
MGEARPWTTT APGSRSAAPG PLTEASSSSR APALDEETMW QMNQRGSESV ESGLYPERPG  60
VPDCAYYLRT GLCRYGLTCR YNHPPDRKLA STFLASSTLG NIRILSP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008794629.23e-36zinc finger CCCH domain-containing protein ZFN-like isoform X1
RefseqXP_008794630.23e-36zinc finger CCCH domain-containing protein ZFN-like isoform X1
RefseqXP_008794631.23e-36zinc finger CCCH domain-containing protein ZFN-like isoform X1
RefseqXP_026661838.13e-36zinc finger CCCH domain-containing protein ZFN-like isoform X1
SwissprotQ9SWF97e-24ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A2H3Y8716e-35A0A2H3Y871_PHODC; zinc finger CCCH domain-containing protein ZFN-like isoform X1
STRINGXP_008794629.12e-36(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17256611
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.14e-25zinc finger protein 1