PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s939631g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB_related
Protein Properties Length: 411aa    MW: 45590.2 Da    PI: 9.9018
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s939631g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.81.4e-091550340
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS
    Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40
                        W++eE e++++a +++G++ W+++a  +  +R+  ++
  PDK_30s939631g001 15 QWSKEELERFYEAYRKYGKD-WRKVAGAVR-NRSSDMV 50
                       6*****************99.*********.**98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.6721162IPR017884SANT domain
SuperFamilySSF466891.42E-101158IPR009057Homeodomain-like
SMARTSM007177.4E-51260IPR001005SANT/Myb domain
PfamPF002492.3E-81554IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-61554IPR009057Homeodomain-like
CDDcd001676.58E-61650No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MSMQKRKLSD MLGTQWSKEE LERFYEAYRK YGKDWRKVAG AVRNRSSDMV EALYNMNREG  60
SDSGRESNDV SRTSRKTQKR GRGKFRLMSK GSDGPYPDLL QYQSGPTSGC LSLLKKKRSG  120
GAVQTCWVLV LIQQGSRPRA VGKRTPRIPV SNMYSRDDRD KILSPNKQAL KSVSNTADDE  180
GAHVAALALA EASQRGGSPQ LSRTPGRRAD HRRSSPAKSG EKKNESEMDS SKLVGVQIEG  240
DCHEGSLGSR EAENGDFVRD VTRLIENDGA AAVETRRKVK KLQEKRKKAA ADMENDQLDD  300
DREACSGTEE GINIRKVKDE IDGETMEGKT VRGSKSSRKR SRQLFFGDES SALDALQTLA  360
DLSVNILLPT STVESEKQEV MPDKIFSLNM SKFDLDFGGL AISAICKTYL V
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1275287RRKVKKLQEKRKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026665139.10.0protein ALWAYS EARLY 3-like isoform X4
TrEMBLA0A3Q0IE670.0A0A3Q0IE67_PHODC; protein ALWAYS EARLY 3-like isoform X4
STRINGXP_008806732.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62302331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.23e-58DNA binding