PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s939691g004

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

GRAS

Protein Properties

Length: 102aa MW: 11726.7 Da PI: 7.1317

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s939691g004	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	82.9	5.3e-26	3	73	280	350
GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyr 350 er+ vE++l+g+ei+n+++cegaerrerhe+lekW +rle aGF+ vpls++a+ qa++ll+ ++ +gy+ PDK_30s939691g004 3 VERARVEKMLFGEEIKNIITCEGAERRERHEKLEKWVQRLELAGFGRVPLSYFATLQARRLLQSYGCEGYK 73 5899*****************************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	15.585	1	77	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.8E-23	3	73	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 102 aa Download sequence Send to blast
MSVERARVEK MLFGEEIKNI ITCEGAERRE RHEKLEKWVQ RLELAGFGRV PLSYFATLQA 60 RRLLQSYGCE GYKGMPAISL GTLDCEDLIL IEGLWTYLGL CK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008776639.1	4e-44	scarecrow-like protein 3
Swissprot	Q9LPR8	2e-32	SCL3_ARATH; Scarecrow-like protein 3
TrEMBL	A0A2H3X0V5	9e-43	A0A2H3X0V5_PHODC; scarecrow-like protein 3
STRING	XP_008776639.1	2e-43	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP604	38	176

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G50420.1	7e-35	scarecrow-like 3

Publications ? help Back to Top
Gong X, et al. SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root. Plant Physiol., 2016. 170(3): p. 1675-83 [PMID:26818732] Lee SA, et al. Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue. Mol Plant, 2016. 9(6): p. 870-84 [PMID:26970019] Choi JW,Lim J Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation. Mol. Cells, 2016. 39(7): p. 524-9 [PMID:27306644]