PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s942051g003

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

NAC

Protein Properties

Length: 343aa MW: 38715.7 Da PI: 8.3019

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s942051g003	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	171.8	2.1e-53	9	136	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhPtdeel+ +yL+++v++ ++++ ++i+evdiyk++Pw+Lp+k++ +++ewyfFs+rd+ky++g r+nra++sgyWkatg+dk++ PDK_30s942051g003 9 LPPGFRFHPTDEELILHYLRNRVASLRCPV-SIIAEVDIYKFDPWNLPAKATFGDREWYFFSPRDRKYPNGIRPNRAAASGYWKATGTDKPI 99 79**************************.89***********988899************************************ PP NAM 93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +s+ ++ ++g+kk Lvfykgr pkg+kt W+mheyrl PDK_30s942051g003 100 VSSeGNGNIGVKKALVFYKGRPPKGVKTGWIMHEYRL 136 9866778**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.7E-64	5	169	IPR003441	NAC domain
PROSITE profile	PS51005	61.259	9	169	IPR003441	NAC domain
Pfam	PF02365	2.6E-27	10	136	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence Send to blast
MSNHPTTSLP PGFRFHPTDE ELILHYLRNR VASLRCPVSI IAEVDIYKFD PWNLPAKATF 60 GDREWYFFSP RDRKYPNGIR PNRAAASGYW KATGTDKPIV SSEGNGNIGV KKALVFYKGR 120 PPKGVKTGWI MHEYRLAEAL NSKKSSRPMK LRDSSMRLDD WVLCRIYQKS NYTLSTEPEH 180 EDSIVEEVFM PSFTNTTPQS NPPKLPKSCS LTELLNNVDF SALSQLLETP PDMPNLEQVP 240 IVYPSSNQNL KNSNSSSDAN NLLAQQLSQA ESPVLPAENS LKRQWTVDGC LEDGSELSHP 300 SKKLVNSSIF TSFLNQFDGP QNNLLSNPFF NQQLLLNSHL KLQ

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence Send to blast

MSNHPTTSLP PGFRFHPTDE ELILHYLRNR VASLRCPVSI IAEVDIYKFD PWNLPAKATF  60
GDREWYFFSP RDRKYPNGIR PNRAAASGYW KATGTDKPIV SSEGNGNIGV KKALVFYKGR  120
PPKGVKTGWI MHEYRLAEAL NSKKSSRPMK LRDSSMRLDD WVLCRIYQKS NYTLSTEPEH  180
EDSIVEEVFM PSFTNTTPQS NPPKLPKSCS LTELLNNVDF SALSQLLETP PDMPNLEQVP  240
IVYPSSNQNL KNSNSSSDAN NLLAQQLSQA ESPVLPAENS LKRQWTVDGC LEDGSELSHP  300
SKKLVNSSIF TSFLNQFDGP QNNLLSNPFF NQQLLLNSHL KLQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	6e-71	8	171	16	167	NO APICAL MERISTEM PROTEIN
1ut4_B	6e-71	8	171	16	167	NO APICAL MERISTEM PROTEIN
1ut7_A	6e-71	8	171	16	167	NO APICAL MERISTEM PROTEIN
1ut7_B	6e-71	8	171	16	167	NO APICAL MERISTEM PROTEIN
3swm_A	7e-71	8	171	19	170	NAC domain-containing protein 19
3swm_B	7e-71	8	171	19	170	NAC domain-containing protein 19
3swm_C	7e-71	8	171	19	170	NAC domain-containing protein 19
3swm_D	7e-71	8	171	19	170	NAC domain-containing protein 19
3swp_A	7e-71	8	171	19	170	NAC domain-containing protein 19
3swp_B	7e-71	8	171	19	170	NAC domain-containing protein 19
3swp_C	7e-71	8	171	19	170	NAC domain-containing protein 19
3swp_D	7e-71	8	171	19	170	NAC domain-containing protein 19
3ulx_A	6e-71	8	171	14	170	Stress-induced transcription factor NAC1
4dul_A	6e-71	8	171	16	167	NAC domain-containing protein 19
4dul_B	6e-71	8	171	16	167	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the promoter of ACO5, an ACC oxidase involved in ethylene biosynthesis. Mediates waterlogging-induced hyponastic leaf movement, and cell expansion in abaxial cells of the basal petiole region, by directly regulating the expression of ACO5 (PubMed:24363315). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269\|PubMed:18849494, ECO:0000269\|PubMed:24363315}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00333	DAP	Transfer from AT3G04070	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By root flooding (PubMed:24363315). Induced by senescence (PubMed:24659488). {ECO:0000269\|PubMed:24363315, ECO:0000269\|PubMed:24659488}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_026659989.1	0.0	NAC transcription factor 29-like
Swissprot	Q84TD6	1e-100	NAC47_ARATH; NAC transcription factor 47
TrEMBL	A0A3Q0HZN3	0.0	A0A3Q0HZN3_PHODC; NAC transcription factor 29-like
STRING	XP_008792524.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3803	37	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04070.1	1e-98	NAC domain containing protein 47

Publications ? help Back to Top
Hofmann NR A NAC transcription factor for flooding: SHYG helps plants keep their leaves in the air. Plant Cell, 2013. 25(12): p. 4771 [PMID:24363314] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]