PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s942051g004

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

NAC

Protein Properties

Length: 316aa MW: 35573.3 Da PI: 8.5425

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s942051g004	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	180.8	3.6e-56	15	142	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhPtdee++++yL +kv + +++ ++i evd++k+ePwdLp k+k +ekewyfF+k+d+ky+tg r+nrat++gyWkatgkdke+ PDK_30s942051g004 15 LPPGFRFHPTDEEIITHYLSEKVMNPGFTA-RAIGEVDLNKCEPWDLPGKAKMGEKEWYFFCKKDRKYPTGVRTNRATEAGYWKATGKDKEI 105 79***********************999.89***********99999*********************************** PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129 ++ kg lvg+kktLvfy+grapkge t+Wvmhe+rle PDK_30s942051g004 106 YRGKGILVGMKKTLVFYRGRAPKGETTNWVMHEFRLE 142 ********************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.75E-64	12	166	IPR003441	NAC domain
PROSITE profile	PS51005	59.549	15	166	IPR003441	NAC domain
Pfam	PF02365	1.2E-28	16	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
MGDVSVLAKE ECMDLPPGFR FHPTDEEIIT HYLSEKVMNP GFTARAIGEV DLNKCEPWDL 60 PGKAKMGEKE WYFFCKKDRK YPTGVRTNRA TEAGYWKATG KDKEIYRGKG ILVGMKKTLV 120 FYRGRAPKGE TTNWVMHEFR LEGRTQYYSH RRTPKDEWAV CRVFHKSTGI KRSPMAELVR 180 MNSFGDGIRD SLMDPSCFSS NNRPSSSYTT GEDGGSCRKI PTSNALMPSN FTMLGLEDPQ 240 YNSLMANGFP NTNNQEGTPM NFPRIPPQDP NVLLPGSANL GYLHQDQSIT RTLSGANDVS 300 NVAAGPVLDL DNLWKY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-52	13	172	15	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-52	13	172	15	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-52	13	172	15	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-52	13	172	15	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-52	13	172	18	174	NAC domain-containing protein 19
3swm_B	2e-52	13	172	18	174	NAC domain-containing protein 19
3swm_C	2e-52	13	172	18	174	NAC domain-containing protein 19
3swm_D	2e-52	13	172	18	174	NAC domain-containing protein 19
3swp_A	2e-52	13	172	18	174	NAC domain-containing protein 19
3swp_B	2e-52	13	172	18	174	NAC domain-containing protein 19
3swp_C	2e-52	13	172	18	174	NAC domain-containing protein 19
3swp_D	2e-52	13	172	18	174	NAC domain-containing protein 19
4dul_A	2e-52	13	172	15	171	NAC domain-containing protein 19
4dul_B	2e-52	13	172	15	171	NAC domain-containing protein 19
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Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed post-transcriptionally by miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808, ECO:0000269\|PubMed:18305205, ECO:0000305\|PubMed:15723790}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008787998.1	0.0	NAC domain-containing protein 100-like
Swissprot	Q9FLR3	6e-97	NAC79_ARATH; NAC domain-containing protein 79
TrEMBL	A0A2H3XS59	0.0	A0A2H3XS59_PHODC; NAC domain-containing protein 100-like
STRING	XP_008787998.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1862	38	104

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G07680.1	1e-97	NAC domain containing protein 80

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Vidal EA,Álvarez JM,Gutiérrez RA Nitrate regulation of AFB3 and NAC4 gene expression in Arabidopsis roots depends on NRT1.1 nitrate transport function. Plant Signal Behav, 2014. 9(3): p. e28501 [PMID:24642706] Lee MH,Jeon HS,Kim HG,Park OK An Arabidopsis NAC transcription factor NAC4 promotes pathogen-induced cell death under negative regulation by microRNA164. New Phytol., 2017. 214(1): p. 343-360 [PMID:28032643]