PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s942751g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB_related
Protein Properties Length: 1078aa    MW: 120729 Da    PI: 5.0837
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s942751g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.91.1e-13853248
                       SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       g W   Ede+l+ av ++G+++W++I++ +  ++++kqck rw+ +l
  PDK_30s942751g001  8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53
                       78*****************************.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.008257IPR017930Myb domain
SuperFamilySSF466892.77E-13459IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.0E-16559IPR009057Homeodomain-like
SMARTSM007177.0E-15655IPR001005SANT/Myb domain
PfamPF002491.3E-11853IPR001005SANT/Myb domain
CDDcd001673.07E-121053No hitNo description
PfamPF118316.1E-58372622IPR021786Pre-mRNA splicing factor component Cdc5p/Cef1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009870Biological Processdefense response signaling pathway, resistance gene-dependent
GO:0010204Biological Processdefense response signaling pathway, resistance gene-independent
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1078 aa     Download sequence    Send to blast
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKC  60
LERYEKLLDA ACAKDENYEP SDDPRKLRPG EIDPNPESKP ARPDPVDMDE DEKEMLSEAR  120
ARLANTRGKK AKRKAREKQL EEARRLASLQ KRRELKAAGI DTRKRKRKRK GIDYNAEIPF  180
EKRPLPGFYD VSGEERPVEQ PKFPTTIEEL EGKRRVDIEA QLRKQDIARN KIAQRQDAPA  240
SILQANKLND PEAVRKRSKL MLPAPQISDQ ELEEIAKMGY ANDFVLSNEE LTEGSGATRA  300
LLANYSQTPR QGMTPLRTPQ RTPAGKGDAI MMEAENLARL RESQTPLFGG ENPELHPSDF  360
SGVTPRKREI QTPNPVATPL ATPGAMSLTP RIGMTPSRDA YSFGATPKVT PFRDELHINE  420
DMEMQDSAKL ELRRQAELKK TLRSGLTNLP QPKNEYQIVS QPIPEENEET EEKIEEDMSD  480
RIAREKAQEQ ARKEALLRKR SKVLQRELPR PPAASLEHIK NSLMRGDEDK SSFVPPTLFE  540
QADEMISKEL LALLEYDNAK YPLDGKQEKE KKKYAKHVAN GKAMPLPEIE DFDEDELKEA  600
NSLIKEEVEF LRVAMGHENE SFDDFVKAHD ACQEDLMYFP ARDSYGLASI AGNSEKLAAL  660
QNEFEIMKRR MDDEAKKATR LEQKVKLLTQ GYQIEATYKQ MDTAATELEC FKALQKQEHL  720
AASYRVSGLI EEVNKQKVLE QSLQQQYGDL LTEHDRIQKL LEEHKAQLRI QEEIAAKNRA  780
LEEELAARNR ALEEEAAAKH GTLDEKLAEE NQHVDTAQLR DVCRPDSGLD QTDLPNADHT  840
ETSSSCKQPI PSIPSSRLFA DGSSERKDAF EGGVAGFVNE EKEMVGHMID APAPVQNQID  900
GLREQETTVA HSGSEVAGAP VIQPTISQQT RDPSASSDSA VQMTACLSDQ ITVSCSTGLE  960
NMVVDSGDGV VDGELVGCSN ISAQAVVPVE SGNADTRSAD QIAGDSSNQA AAASALCSEE  1020
KIHSDFSIRT AVNSADYALN STDGGIIMKN KIERPERISK RVFNYRELTE GTLIVGFN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5mqf_L0.027583799Cell division cycle 5-like protein
5xjc_L0.027583799Cell division cycle 5-like protein
5yzg_L0.027583799Cell division cycle 5-like protein
5z56_L0.027583799Cell division cycle 5-like protein
5z57_L0.027583799Cell division cycle 5-like protein
5z58_L0.027583799Cell division cycle 5-like protein
6ff4_L0.027583799Cell division cycle 5-like protein
6ff7_L0.027583799Cell division cycle 5-like protein
6icz_L0.027583799Cell division cycle 5-like protein
6id0_L0.027583799Cell division cycle 5-like protein
6id1_L0.027583799Cell division cycle 5-like protein
6qdv_O0.027583799Cell division cycle 5-like protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1150169KRRELKAAGIDTRKRKRKRK
2163169KRKRKRK
3164169RKRKRK
Functional Description ? help Back to Top
Source Description
UniProtComponent of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008801722.10.0cell division cycle 5-like protein
RefseqXP_008801723.10.0cell division cycle 5-like protein
SwissprotP929480.0CDC5L_ARATH; Cell division cycle 5-like protein
TrEMBLA0A2H3YP330.0A0A2H3YP33_PHODC; cell division cycle 5-like protein
STRINGXP_008801722.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44163553
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09770.10.0cell division cycle 5
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Li S, et al.
    MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis.
    Plant Cell, 2018. 30(2): p. 481-494
    [PMID:29437988]