PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s943081g003

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

Protein Properties

Length: 912aa MW: 100421 Da PI: 6.9036

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s943081g003	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	59.8	4.6e-19	316	415	1	98
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+kvl+ sd+++ grlvlpk +ae++ ++++e+ lt++d +g++W +++++ +++s++yvl+ G ++ +L++gD+v+F++++ PDK_30s943081g003 316 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLTVQDAKGKEWHFQFRFwpNNNSRMYVLE-GVTPCIQSLQLQAGDTVTFSRID-P 405 99************************555566778***********99899999999.*******************987.7 PP EE..EEEEE- CS B3 89 efelvvkvfr 98 e++lv+++++ PDK_30s943081g003 406 EGKLVMGFRK 415 7777777776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	2.6E-31	308	425	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	7.59E-21	313	416	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	8.23E-24	314	415	No hit	No description
PROSITE profile	PS50863	11.364	316	417	IPR003340	B3 DNA binding domain
SMART	SM01019	4.2E-22	316	416	IPR003340	B3 DNA binding domain
Pfam	PF02362	3.5E-16	316	415	IPR003340	B3 DNA binding domain
PROSITE profile	PS51050	14.464	591	642	IPR011124	Zinc finger, CW-type
Pfam	PF07496	5.6E-13	596	639	IPR011124	Zinc finger, CW-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010030	Biological Process	positive regulation of seed germination
GO:2000034	Biological Process	regulation of seed maturation
GO:0003677	Molecular Function	DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 912 aa Download sequence Send to blast
METKRCINVA CGATTLEGEW KKGWRLKSGG FANLCSKCGL DLGCVGPWVS GFVVLRYMIL 60 WSALVLLLRL LALRLRGDSD SVIGFLVYWT ISISDFCSWV SREVMQTFLP QHNQRLFALS 120 ARTVKDEKVN NVDQTIAGSA SGLPTISADG RMDVSAVGKG KVVMRLGKNI DSNQQRIVDI 180 EQRKSVNGSF RHIRWNHLAP NAGEVGRLTL GTSSAERPLV MLPPPNALTE GGDQNIASSA 240 FQQIQRSHQF LPQLPKEASG ATPDASKDGV SHIRVARPPA EGRGRNQLLP RYWPRITDEE 300 LQQISGDSNS TIVPLFEKVL SASDAGRIGR LVLPKACAEA YFPPISQPEG LPLTVQDAKG 360 KEWHFQFRFW PNNNSRMYVL EGVTPCIQSL QLQAGDTVTF SRIDPEGKLV MGFRKATNTA 420 PLQDSQISAI ANGALGNETF FPGVNENLPT TDKHEDRPNE GLQFIQSQSR NIGAKCRRLH 480 MDAEDALELL LTWEEFQDLL RPAPNARPSI VMIEDHEIEE YDVGSGLNEG TCSMAHGTHT 540 DDLVTEGFGA LEPPVLGKKT IYTARLTGHV SLFSKKCDHL QQDCSGYMHD LWERDQWIQC 600 DDCSKWRRLP DNDVLLPSMW TCADNTLDPK RSSCSAAEEL SQKDLQSLLR QYADHKRQQN 660 NATCKQHFAV LDASSGLDAL ANAAALGDVC NQTTSSVATT TKHPRHRPGC TCIVCIQPPS 720 GKGPKHSPTC TCNVCLTVKR RFKTLMMRKK KRQSEREEAE AQKRDAWGSK KEPEGGSLSR 780 SVQHLDVHQE SDQLSPGYSR TVIEKLDMSK RQINLNCHPG SDEVPQAGPP RLSMMSLLQE 840 ANLPLETYLK QNGLTSLVGE QGSSSSPTVP QGPEESEGRT PDESYFASVV QEKDGGAEEG 900 HGGPDKARGD AA

Sequence ? help Back to Top

Protein Sequence Length: 912 aa Download sequence Send to blast

METKRCINVA CGATTLEGEW KKGWRLKSGG FANLCSKCGL DLGCVGPWVS GFVVLRYMIL  60
WSALVLLLRL LALRLRGDSD SVIGFLVYWT ISISDFCSWV SREVMQTFLP QHNQRLFALS  120
ARTVKDEKVN NVDQTIAGSA SGLPTISADG RMDVSAVGKG KVVMRLGKNI DSNQQRIVDI  180
EQRKSVNGSF RHIRWNHLAP NAGEVGRLTL GTSSAERPLV MLPPPNALTE GGDQNIASSA  240
FQQIQRSHQF LPQLPKEASG ATPDASKDGV SHIRVARPPA EGRGRNQLLP RYWPRITDEE  300
LQQISGDSNS TIVPLFEKVL SASDAGRIGR LVLPKACAEA YFPPISQPEG LPLTVQDAKG  360
KEWHFQFRFW PNNNSRMYVL EGVTPCIQSL QLQAGDTVTF SRIDPEGKLV MGFRKATNTA  420
PLQDSQISAI ANGALGNETF FPGVNENLPT TDKHEDRPNE GLQFIQSQSR NIGAKCRRLH  480
MDAEDALELL LTWEEFQDLL RPAPNARPSI VMIEDHEIEE YDVGSGLNEG TCSMAHGTHT  540
DDLVTEGFGA LEPPVLGKKT IYTARLTGHV SLFSKKCDHL QQDCSGYMHD LWERDQWIQC  600
DDCSKWRRLP DNDVLLPSMW TCADNTLDPK RSSCSAAEEL SQKDLQSLLR QYADHKRQQN  660
NATCKQHFAV LDASSGLDAL ANAAALGDVC NQTTSSVATT TKHPRHRPGC TCIVCIQPPS  720
GKGPKHSPTC TCNVCLTVKR RFKTLMMRKK KRQSEREEAE AQKRDAWGSK KEPEGGSLSR  780
SVQHLDVHQE SDQLSPGYSR TVIEKLDMSK RQINLNCHPG SDEVPQAGPP RLSMMSLLQE  840
ANLPLETYLK QNGLTSLVGE QGSSSSPTVP QGPEESEGRT PDESYFASVV QEKDGGAEEG  900
HGGPDKARGD AA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j9a_A	2e-67	294	423	2	131	B3 domain-containing transcription repressor VAL1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	738	749	KRRFKTLMMRKK
2	738	751	KRRFKTLMMRKKKR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_026665534.1	0.0	B3 domain-containing protein Os07g0679700
Swissprot	Q6Z3U3	0.0	Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBL	A0A3Q0IF82	0.0	A0A3Q0IF82_PHODC; B3 domain-containing protein Os07g0679700
STRING	XP_008808301.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6519	37	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32010.1	1e-174	HSI2-like 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]