PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s945381g005
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB_related
Protein Properties Length: 713aa    MW: 78700.1 Da    PI: 8.1498
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s945381g005genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.23.4e-07576625147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                        r +++  E e lv+av++lG+g+W+ +        k+Rt  ++k++w ++
  PDK_30s945381g005 576 RRPFSVSEVEALVHAVEKLGTGRWRDVKLQAFdnaKHRTYVDLKDKWKTL 625
                        678999********************8877779**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.297571630IPR017930Myb domain
SMARTSM007177.3E-7575628IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-10576626IPR009057Homeodomain-like
SuperFamilySSF466891.08E-15577658IPR009057Homeodomain-like
CDDcd116603.25E-17577627No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 713 aa     Download sequence    Send to blast
MVFKKRLECS FNGYQVPAMP RIPKSAKGKR SVRRKVVDNR MCAFDLLIAV AGKVLERDNS  60
STVNGIVGNY NQNVKQEQLD EEKFCKDEPF DQVSCNESTS GSELPIQRQI TQTLKEHSQS  120
PNATTSGPTS AILKSDILNK DTCTGDFIAN GSKEEFGYSL GTTAKKCCTK SHSPGSAESC  180
EAEMVDDIKT PFLAEQHEAE TGVCKNIQHA WSLDNPMERD AKPPALSSSD SSIEMPLHGH  240
QIPRISSYPI CQDNMELAVN RDDDENSSGC TNPSTTTYTA LKPQYHKIRK VFSRTEMKPA  300
SHSRKICYTR RRTQRPSFKT GKVFEHCSIS PSDGGISSKG FCNSFEKEMN YITNNSHAAL  360
HGGISLNKVF SLAVKLSIKS FKVPELFIEI PETATVGSLK RTVMEAVTAI LGGGLHVGVL  420
LQGKEVRDDN ETLLQAGISH VDKMDNLGFM LEPNSTGASS VTSPEYPHSL LPYNATEPLA  480
RLPAVSPAPV PEIFNASPEP WPNSAVNLPE SDHDSVYSPT ETKLLNKAAV ATPTAATATT  540
SNSRALVAVP AMSIEALSMV PLHQPRLSEL TQRRIRRPFS VSEVEALVHA VEKLGTGRWR  600
DVKLQAFDNA KHRTYVDLKD KWKTLVHTAR ISPQQRRGEP VPQELLDRVL AIHAFWSQQH  660
ALLQSRSLLS IYDGGGAKRQ TVSCKDMIEE KGKGNNNNIQ ELLYYSLCRM YHS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A2e-495616611102Telomere binding protein TBP1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008777072.10.0telomere repeat-binding protein 5-like isoform X2
TrEMBLA0A2H3X1W80.0A0A2H3X1W8_PHODC; telomere repeat-binding protein 5-like isoform X2
STRINGXP_008777057.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5245714
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-91TRF-like 2