PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s945591g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family WOX
Protein Properties Length: 281aa    MW: 31681.4 Da    PI: 5.6668
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s945591g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.82.5e-20100160257
                        T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
           Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                        r+R+t+t+ ql++Le+ F + n +ps+++++e + +l    +++e++V++WFqNrRa+ k+
  PDK_30s945591g001 100 RQRWTPTPMQLQILESIFDQgNGTPSKQKIKEVTLELsqhgQISETNVYNWFQNRRARSKR 160
                        89*****************99**************************************97 PP
2Wus_type_Homeobox101.46.6e-3399162265
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ar+RWtPtp Q++iLe+++++G  tP+k++i+++t eL+++G+i+++NV++WFQNr+aR+++kq
  PDK_30s945591g001  99 ARQRWTPTPMQLQILESIFDQGNGTPSKQKIKEVTLELSQHGQISETNVYNWFQNRRARSKRKQ 162
                        789***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.4E-1795166IPR009057Homeodomain-like
PROSITE profilePS5007114.67396161IPR001356Homeobox domain
SuperFamilySSF466892.99E-1898164IPR009057Homeodomain-like
SMARTSM003893.1E-1398165IPR001356Homeobox domain
PfamPF000463.9E-18100160IPR001356Homeobox domain
CDDcd000863.18E-13100162No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MEWEMACAAN NSDQSNRGEG EERRGGGEGM TDGVLYMKVM TDEQMEVLRR QISVYATICE  60
QLVEMHKAVT AQQDSLAGMR LGRLYCDPLM TPGGHKITAR QRWTPTPMQL QILESIFDQG  120
NGTPSKQKIK EVTLELSQHG QISETNVYNW FQNRRARSKR KQSAALPNNT DSEVEADDES  180
PSEKKPKSEK HTHESLPSRI DDISIHGTQM NPELRSIDLE TNPRQGMYAS NGISRSYGTL  240
GQMSFYENAL SNSRFDHLIG KMEIPRSFSP CQQGESYDLI G
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153161RRARSKRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00669PBMTransfer from GRMZM2G038252Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008812362.10.0WUSCHEL-related homeobox 8-like
SwissprotQ5QMM31e-109WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBLA0A2H3ZE140.0A0A2H3ZE14_PHODC; WUSCHEL-related homeobox 8-like
STRINGXP_008812362.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38983776
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35550.12e-63WUSCHEL related homeobox 13
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]