PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s946431g005
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family NF-YB
Protein Properties Length: 104aa    MW: 11932.6 Da    PI: 4.9337
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s946431g005genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB175.55.1e-55595292
              NF-YB  2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92
                       reqdrflPian++rim+k++P+n+ki+kdake+vqecvsefisf+tseasdkcqrekrktingddllwa++tlGfedyveplk+yl+ yre
  PDK_30s946431g005  5 REQDRFLPIANIGRIMRKAIPENGKIAKDAKESVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMGTLGFEDYVEPLKLYLQLYRE 95
                       89****************************************************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.104.3E-50496IPR009072Histone-fold
SuperFamilySSF471133.88E-38796IPR009072Histone-fold
PfamPF008087.2E-291074IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006156.3E-213856No hitNo description
PROSITE patternPS0068504157IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006156.3E-215775No hitNo description
PRINTSPR006156.3E-217694No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 104 aa     Download sequence    Send to blast
MADSREQDRF LPIANIGRIM RKAIPENGKI AKDAKESVQE CVSEFISFIT SEASDKCQRE  60
KRKTINGDDL LWAMGTLGFE DYVEPLKLYL QLYREDLRSP GMNT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A3e-49595393NF-YB
4awl_B2e-49595494NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A2e-49595494NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008791403.13e-63nuclear transcription factor Y subunit B-4-like isoform X1
RefseqXP_008791404.12e-63nuclear transcription factor Y subunit B-4-like isoform X2
RefseqXP_008791405.13e-63nuclear transcription factor Y subunit B-4-like isoform X3
SwissprotP252093e-58NFYB_MAIZE; Nuclear transcription factor Y subunit B
TrEMBLA0A2H3Y0337e-62A0A2H3Y033_PHODC; nuclear transcription factor Y subunit B-4-like isoform X1
TrEMBLA0A2H3Y0415e-62A0A2H3Y041_PHODC; nuclear transcription factor Y subunit B-4-like isoform X2
TrEMBLA0A2H3Y0L06e-62A0A2H3Y0L0_PHODC; nuclear transcription factor Y subunit B-4-like isoform X3
STRINGXP_008791402.11e-62(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20138331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.18e-59nuclear factor Y, subunit B3
Publications ? help Back to Top
  1. Li XY, et al.
    Evolutionary variation of the CCAAT-binding transcription factor NF-Y.
    Nucleic Acids Res., 1992. 20(5): p. 1087-91
    [PMID:1549471]