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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | PDK_30s946471g006 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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| Family | C2H2 | ||||||||
| Protein Properties | Length: 214aa MW: 23721.6 Da PI: 5.9495 | ||||||||
| Description | C2H2 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | zf-C2H2 | 13.9 | 0.00016 | 26 | 48 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
++C++C + F ++ L H++ H
PDK_30s946471g006 26 FSCNYCQRKFYSSQALGGHQNAH 48
89******************988 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF57667 | 8.03E-6 | 25 | 53 | No hit | No description |
| PROSITE profile | PS50157 | 11.094 | 26 | 53 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 28 | 48 | IPR007087 | Zinc finger, C2H2 |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046872 | Molecular Function | metal ion binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 214 aa Download sequence Send to blast |
MEPENLELNL GLALQPSSLP EPAGVFSCNY CQRKFYSSQA LGGHQNAHKL ERSLAKRSRE 60 LASVLHKHAT STGAESERLR KEGKYNVGRP VSREEMRAST WPGSYKGSND KGGLADEMDL 120 SLSSFHLLDE VALENEKGSG YSMIGIRSLF HKNVLDCTNL EYNEGVDCLN VPSYCSSQLI 180 LMPIWKGDSW WESPGIPIRT GNDWVLTSSG DLQL |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_017701026.1 | 1e-121 | uncharacterized protein LOC103718394 | ||||
| TrEMBL | A0A2H3ZXZ8 | 1e-120 | A0A2H3ZXZ8_PHODC; uncharacterized protein LOC103718394 | ||||
| STRING | XP_008805413.1 | 4e-83 | (Phoenix dactylifera) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP183 | 36 | 274 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G57520.1 | 1e-20 | zinc finger protein 2 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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