PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s950491g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family ERF
Protein Properties Length: 201aa    MW: 22348 Da    PI: 4.836
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s950491g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP244.15.1e-144088155
                AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                       + ykGVr++    +Wv+e+r+p   +k+ r++lg+f    +Aa+a++ a+ +l+g
  PDK_30s950491g001 40 PVYKGVRRRN-ADKWVCEVREP---NKKSRIWLGTFPE--MAARAHDVAAMALRG 88
                       68*****887.8******9998...347******9876..*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.2E-94088IPR001471AP2/ERF domain
SMARTSM003805.3E-2141102IPR001471AP2/ERF domain
PROSITE profilePS5103217.9784196IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-174198IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.5E-274198IPR001471AP2/ERF domain
PRINTSPR003672.9E-84253IPR001471AP2/ERF domain
CDDcd000182.19E-234298No hitNo description
PRINTSPR003672.9E-87898IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MESFSDYSMD SPLAQRSASD EEAYATRRAG RTKFRETRHP VYKGVRRRNA DKWVCEVREP  60
NKKSRIWLGT FPEMAARAHD VAAMALRGRS ACLNFADSAW LCRVPTSSSP KDIQRAAMEA  120
AEAFRPQTER DAAESREDAA MAMIAGPSLA AADDPFYMDD GLNFGMQGYL DMAAGLLMEP  180
PPIYADEEVS NGDVSLWSYS I
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00557DAPTransfer from AT5G51990Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4977310.0DQ497731.1 Sabal minor CBF-like transcription factor (CBF) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008803257.11e-142dehydration-responsive element-binding protein 1G
SwissprotQ9FJ934e-61DRE1D_ARATH; Dehydration-responsive element-binding protein 1D
TrEMBLA0A2H3YT551e-141A0A2H3YT55_PHODC; dehydration-responsive element-binding protein 1G
STRINGXP_008803257.11e-141(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.17e-53C-repeat-binding factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guttikonda SK, et al.
    Overexpression of AtDREB1D transcription factor improves drought tolerance in soybean.
    Mol. Biol. Rep., 2014. 41(12): p. 7995-8008
    [PMID:25192890]
  3. Zhang T, et al.
    Overexpression of a NF-YB3 transcription factor from Picea wilsonii confers tolerance to salinity and drought stress in transformed Arabidopsis thaliana.
    Plant Physiol. Biochem., 2015. 94: p. 153-64
    [PMID:26093308]
  4. Carlow CE, et al.
    Nuclear localization and transactivation by Vitis CBF transcription factors are regulated by combinations of conserved amino acid domains.
    Plant Physiol. Biochem., 2017. 118: p. 306-319
    [PMID:28675818]
  5. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]