PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s951221g003

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

Protein Properties

Length: 248aa MW: 28710.1 Da PI: 10.266

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s951221g003	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	46.5	6.7e-15	130	213	1	90
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+k +++s+v+ +l lp++f+++h +++++++tl de+g +++ + k++ l++GW++F ++L +gD +vF+l++ ++f PDK_30s951221g003 130 FVKPMLQSHVTGGFWLGLPRHFCTKHL--PRKDTMMTLVDENGDEFKSLYLAPKNG----LSGGWRGFSIYHELVDGDALVFQLVKPTTF 213 89**********************5..457789***********555555....9********************9875555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	5.4E-18	121	215	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.16E-22	123	216	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.34E-22	128	215	No hit	No description
PROSITE profile	PS50863	9.742	130	221	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.4E-13	130	213	IPR003340	B3 DNA binding domain
SMART	SM01019	2.8E-15	130	222	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MGARKALSYE ELRQKKLEEN KRKLDELNLS HLSSVLREST SPKTPPAKQT KRKVPQEGGL 60 VVLRRSDRLA NLPQQPRYRE VASDIAERPR RSFKSRHLAD RVYASDEARL YAQTKAEEVE 120 SQLDPKFPTF VKPMLQSHVT GGFWLGLPRH FCTKHLPRKD TMMTLVDENG DEFKSLYLAP 180 KNGLSGGWRG FSIYHELVDG DALVFQLVKP TTFKVIDWLI YEQMIKYWLV KPTTFKVYII 240 RASGYNQI

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008788064.1	1e-162	B3 domain-containing protein Os06g0194400
Refseq	XP_017697966.1	1e-162	B3 domain-containing protein Os06g0194400-like
Swissprot	Q69V36	5e-82	Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBL	A0A2H3XSH4	1e-161	A0A2H3XSH4_PHODC; B3 domain-containing protein Os06g0194400
STRING	XP_008788064.1	1e-162	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1756	38	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	3e-65	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]