PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s951951g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

Protein Properties

Length: 155aa MW: 17327.6 Da PI: 10.3173

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s951951g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	99.2	2.5e-31	2	90	1	85
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+kv tpsdv+k++rlv+pk++ae++ + +e++ l +ed++g+sW+++++y+++s++yv+tkGW++Fvk+++L++gD+v F + PDK_30s951951g001 2 FDKVVTPSDVGKLNRLVIPKQHAERYfpldASANEKGLLLCFEDRTGKSWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFCRG 90 89*************************955667889**********************************************843 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	4.71E-30	1	92	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	7.34E-27	1	87	No hit	No description
Gene3D	G3DSA:2.40.330.10	5.1E-40	1	108	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	4.4E-28	2	90	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	14.48	2	102	IPR003340	B3 DNA binding domain
SMART	SM01019	3.7E-24	2	102	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009908	Biological Process	flower development
GO:0048366	Biological Process	leaf development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 155 aa Download sequence Send to blast
MFDKVVTPSD VGKLNRLVIP KQHAERYFPL DASANEKGLL LCFEDRTGKS WRFRYSYWNS 60 SQSYVMTKGW SRFVKEKRLD AGDTVSFCRG ATPKRVRLFG VDLNCPQSDG GADSGSGPSL 120 SMRQMRPRST LPLLERSQGG PDSSRATSSP GKEQQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	2e-55	1	99	7	107	B3 domain-containing transcription factor NGA1
5os9_B	2e-55	1	99	7	107	B3 domain-containing transcription factor NGA1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC105363	1e-87	AC105363.2 Oryza sativa Japonica Group chromosome 3 clone OJ1705B08, complete sequence.
GenBank	AC210491	1e-87	AC210491.1 Oryza glaberrima clone OG_BBa0088K23, complete sequence.
GenBank	AP014959	1e-87	AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBank	CP012611	1e-87	CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
GenBank	CT833296	1e-87	CT833296.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA019E02, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008808297.1	7e-60	B3 domain-containing protein Os02g0683500
Swissprot	Q7F9W2	2e-58	Y4814_ORYSJ; B3 domain-containing protein Os04g0581400
TrEMBL	M0STC9	1e-61	M0STC9_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr4P30170_001	2e-62	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP583	37	168

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46870.1	3e-56	B3 family protein

Publications ? help Back to Top
Je BI, et al. RAV-Like1 maintains brassinosteroid homeostasis via the coordinated activation of BRI1 and biosynthetic genes in rice. Plant Cell, 2010. 22(6): p. 1777-91 [PMID:20581303]