PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s953521g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family ERF
Protein Properties Length: 221aa    MW: 24531.8 Da    PI: 11.6671
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s953521g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.92.2e-17121165249
                AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaa 49 
                        +y+GVr+++ +g+++AeIrdp   + +  r++lg+f+ta eAaka+++a
  PDK_30s953521g001 121 RYRGVRQRP-WGKFAAEIRDP---NrRGSRIWLGTFDTAVEAAKAYDRA 165
                        7********.**********9...4334*******************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.14E-17121169IPR016177DNA-binding domain
CDDcd000181.75E-20121165No hitNo description
PROSITE profilePS5103219.19121165IPR001471AP2/ERF domain
PfamPF008475.7E-12121165IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.6E-25121171IPR001471AP2/ERF domain
SMARTSM003805.6E-22121185IPR001471AP2/ERF domain
PRINTSPR003678.8E-11122133IPR001471AP2/ERF domain
PRINTSPR003678.8E-11145161IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MASIVDDDST LDLIREHLLG DLPLSPLPPP SAPHGIAVSD YLDTTQPFSG SGRIDPYGVL  60
EAYRFAEPVD PMIRFGGDSQ QASDLCLPSL TISLPPVRKF EIEWTEAAAA VGPAEHNDGR  120
RYRGVRQRPW GKFAAEIRDP NRRGSRIWLG TFDTAVEAAK AYDRAGRPMT APLSRCAAAR  180
RSSTSPTRSA TPAAASRPLH RRSRRRGRGR GRRPRRRRRR K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-19119169353ATERF1
3gcc_A3e-19119169353ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1201211RSRRRGRGRGR
2203220RRRGRGRGRRPRRRRRRK
3211216RRPRRR
4211218RRPRRRRR
5211219RRPRRRRRR
6212219RPRRRRRR
7214220RRRRRRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026658220.11e-118ethylene-responsive transcription factor ERF107-like
TrEMBLA0A3Q0HXY91e-116A0A3Q0HXY9_PHODC; ethylene-responsive transcription factor ERF107-like
STRINGXP_008781946.11e-115(Phoenix dactylifera)
STRINGXP_008786269.11e-116(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.16e-27ethylene responsive element binding factor 5