PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s955201g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family WRKY
Protein Properties Length: 460aa    MW: 49792.9 Da    PI: 5.7391
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s955201g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.84e-32104161260
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                        +DgynWrKYGqK+vkgse+prsYY+Ct+++C++kkkvers+ +++++ei+Y+g Hnh+k
  PDK_30s955201g001 104 EDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQMKKKVERSH-EGHITEIIYKGAHNHPK 161
                        8****************************************.***************85 PP
2WRKY33.67.9e-11319339121
                        ---SS-EEEEEEE--TT-SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefp 21 
                        ldDgy+WrKYGqK+vkg+++p
  PDK_30s955201g001 319 LDDGYRWRKYGQKVVKGNPNP 339
                        59******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.9498162IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.2E-29100162IPR003657WRKY domain
SuperFamilySSF1182901.83E-25102162IPR003657WRKY domain
SMARTSM007743.8E-35103161IPR003657WRKY domain
PfamPF031061.2E-24104160IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.6E-13304340IPR003657WRKY domain
SuperFamilySSF1182904.58E-9311341IPR003657WRKY domain
PROSITE profilePS5081115.778314351IPR003657WRKY domain
SMARTSM007745.1E-4319357IPR003657WRKY domain
PfamPF031062.2E-6320339IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
GVSTVDQQQS LPSIGVSVQS GKHIQTPSLE TGTLNLQNQQ QFNLQAGFSD SADRKDATDD  60
IMFDQRMSDS FMGNGHSPPP DDQQDGEAAP KGELSSVALG APAEDGYNWR KYGQKQVKGS  120
EYPRSYYKCT HPNCQMKKKV ERSHEGHITE IIYKGAHNHP KPPPNRRSGV PSFHPFNDPQ  180
VDGSEQPGSQ ASFDGKPLWA TSTQNGTGGQ EWRGDGLEAT SSATVAAELC NPSTSIQTQN  240
GPRFESQDVL DVSSAQSNEE EEDDQATHGS VSLGGDGEGD ETESKRRKLD ACAIEMSAAS  300
RTVREPRVVV QTTSEVDILD DGYRWRKYGQ KVVKGNPNPS LHRRPEPTQD GLVRFDAPTP  360
LGTFCLPGRE QLGPATAFSF GMGQQGLARL AMAGLGPVAS MNMPVLPPVH PFLRHHQASE  420
AGFKIPKGEP KEEPISESRP PISNGGSAYH QMMSRLPLGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-171031631475WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0508731e-107KM050873.1 Bactris coloniata isolate PL98 WRKY transcription factor 12 (WRKY12) gene, partial cds.
GenBankKM0508741e-107KM050874.1 Bactris concinna isolate PL89 WRKY transcription factor 12 (WRKY12) gene, partial cds.
GenBankKM0508771e-107KM050877.1 Bactris major isolate PL114 WRKY transcription factor 12 (WRKY12) gene, partial cds.
GenBankKM0508801e-107KM050880.1 Bactris plumeriana isolate PL99 WRKY transcription factor 12 (WRKY12) gene, partial cds.
GenBankKM0508811e-107KM050881.1 Bactris sp. BRG NY Tiwari et al. 2223 isolate PL80 WRKY transcription factor 12 (WRKY12) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010913249.10.0probable WRKY transcription factor 2
RefseqXP_010913250.10.0probable WRKY transcription factor 2
RefseqXP_010913251.10.0probable WRKY transcription factor 2
RefseqXP_010913252.10.0probable WRKY transcription factor 2
RefseqXP_029118522.10.0probable WRKY transcription factor 2
SwissprotQ9FG772e-85WRKY2_ARATH; Probable WRKY transcription factor 2
TrEMBLA0A2H3YC150.0A0A2H3YC15_PHODC; probable WRKY transcription factor 2 isoform X1
TrEMBLA0A2H3YC660.0A0A2H3YC66_PHODC; probable WRKY transcription factor 2 isoform X4
STRINGXP_008796561.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP207538100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.11e-87WRKY DNA-binding protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  4. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]