PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s956351g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

bZIP

Protein Properties

Length: 227aa MW: 25870.8 Da PI: 9.3096

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s956351g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	29.8	1.3e-09	8	42	8	39
HCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHH CS bZIP_1 8 rrkqkNReAArrsRqRKkaeieeLee...kvkeLe 39 rr+++NReAAr+sR+RKka++++Le + ++Le PDK_30s956351g001 8 RRLAQNREAARKSRLRKKAYVQQLESsriRLQQLE 42 9***********************97222444444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	0.0021	6	77	IPR004827	Basic-leucine zipper domain
CDD	cd14708	5.42E-23	6	57	No hit	No description
SuperFamily	SSF57959	3.06E-7	7	48	No hit	No description
PROSITE pattern	PS00036	0	8	23	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.726	8	47	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	4.5E-7	8	44	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	5.7E-8	8	49	No hit	No description
Pfam	PF14144	8.3E-32	85	160	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
MAWFTTLRRL AQNREAARKS RLRKKAYVQQ LESSRIRLQQ LEQELQRARS QGLFLGGGSA 60 SGDLSSGAAM FDMEYARWLD DNSKHMSELR GGLQAHLPDG NLAVIVDECI AHYDELFRLK 120 GVAAKSDVFH LLTGMWATPA ERCFLWMGGF KPSELLKILM PQLDPLTEQQ LMGICNHSYK 180 NIKRLCQSKI QTESKQEETC INTRKITRSR LLFNTLSDSN SFFPPPC

Functional Description ? help Back to Top
Source	Description
UniProt	Required for the formation of the blade-sheath boundary in leaves. Promotes flowering. {ECO:0000269\|PubMed:9490265}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008804825.3	1e-121	transcription factor LG2
Swissprot	O49067	1e-101	LG2_MAIZE; Transcription factor LG2
TrEMBL	A0A2H3YWG1	1e-120	A0A2H3YWG1_PHODC; transcription factor LG2
STRING	XP_008804825.1	1e-122	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP25378	4	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.2	4e-71	bZIP family protein

Publications ? help Back to Top
Walsh J,Freeling M The liguleless2 gene of maize functions during the transition from the vegetative to the reproductive shoot apex. Plant J., 1999. 19(4): p. 489-95 [PMID:10504571] Schnable PS, et al. The B73 maize genome: complexity, diversity, and dynamics. Science, 2009. 326(5956): p. 1112-5 [PMID:19965430]